Happening @ Michigan https://events.umich.edu/list/rss RSS Feed for Happening @ Michigan Events at the University of Michigan. EEB Virtual Seminar/student evaluation: Origins and evolution of the gyromitrin mycotoxin in false morel mushrooms (April 15, 2021 3:00pm) https://events.umich.edu/event/79788 79788-20493917@events.umich.edu Event Begins: Thursday, April 15, 2021 3:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Alden presents his preliminary seminar

See your email or email us eeb-webinfo@umich.edu for the passcode.

Image: Alden Dirks

]]>
Livestream / Virtual Mon, 05 Apr 2021 15:39:50 -0400 2021-04-15T15:00:00-04:00 2021-04-15T16:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual False morel mushrooms on the ground
LSA Technology Services Research Support Office Hours (April 15, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270794@events.umich.edu Event Begins: Thursday, April 15, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-15T15:00:00-04:00 2021-04-15T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
BME 500 Seminar: Kelly J. Cross (April 15, 2021 4:00pm) https://events.umich.edu/event/81394 81394-20889824@events.umich.edu Event Begins: Thursday, April 15, 2021 4:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Join us for a virtual seminar series on topics related to race and science, technology, engineering and math (STEM) education. https://happenings.wustl.edu/event/an_honest_conversation_about_inequity_in_engineering#.YG9vT-hKhPY

Details:
DATE: Thursday, April 15, 2021
TIME: 4:00-5:00 PM
ZOOM LINK TO REGISTER: https://wustl.zoom.us/webinar/register/WN_NvH4qVTSRx2uSXbdW-eXNA

]]>
Lecture / Discussion Wed, 14 Apr 2021 14:13:34 -0400 2021-04-15T16:00:00-04:00 2021-04-15T17:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
Coded Bias "At the Movies" Panel Discussion (April 15, 2021 4:00pm) https://events.umich.edu/event/83580 83580-21430624@events.umich.edu Event Begins: Thursday, April 15, 2021 4:00pm
Location: Off Campus Location
Organized By: Information Assurance

Join a panel of U-M experts over Zoom for an "At the Movies" style discussion of the film Coded Bias. The panelists will exchange views on the challenges presented by technologies that reflect the systemic biases in American society. Panelists include:
- Nazanin Andalibi, assistant professor of information, School of Information; assistant professor of Digital Studies Institute, College of Literature, Science, and the Arts (LSA)
- Mingyan Liu, Peter and Evelyn Fuss Chair of Electrical and Computer Engineering, Electrical Engineering and Computer Science (EECS)
- Nicholson Price, professor of law, Law School
- Grace Trinidad (moderator), Ethics, Legal, and Social Implications (ELSI) postdoctoral fellow, School of Public Health

AVAILABLE PRIOR TO THE DISCUSSION
To be better informed prior to the Coded Bias panel discussion, be sure to take time to watch a free screening of the film between April 8 and April 14. More information is available at https://safecomputing.umich.edu/events/dissonance/coded-bias-free-movie-viewing

Access to Coded Bias and the panel discussion are brought to you by the Dissonance Event Series, ITS Information Assurance, the U-M School of Information, and the Law School’s Privacy and Technology Law Association.

Add the panel discussion to your Google Calendar: https://calendar.google.com/calendar/u/0/r/eventedit/copy/MWZjMnFtNmw0MzN2MDk0cmRyaHQ4b3VpMTggdW1pY2guZWR1X2ZkczI0Z2V2cGE0MnY5NTc2bG5wZTJjbWxrQGc

]]>
Lecture / Discussion Fri, 09 Apr 2021 14:43:13 -0400 2021-04-15T16:00:00-04:00 2021-04-15T17:00:00-04:00 Off Campus Location Information Assurance Lecture / Discussion Dissonance Event Series: Panel Discussion on the film Coded Bias
BME Master's Defense: Fatimah Alkaabi (April 16, 2021 12:00pm) https://events.umich.edu/event/83558 83558-21424731@events.umich.edu Event Begins: Friday, April 16, 2021 12:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

The central auditory system consists of the brain nuclei that transmit peripheral auditory nerve input to the auditory cortex for hearing perception. Damage to the auditory end organ, the cochlea, can result in hearing loss that drives the central auditory system to disarray causing disorders such as hyperacusis and tinnitus. These disorders can negatively affect patients’ quality of life. Tinnitus sufferers generally describe their tinnitus as a narrowband of sound that occurs in quiet, while hyperacusis sufferers express an exaggerated perception of sound level or intensity. These two disorders are often grouped together because tinnitus sufferers tend to report symptoms of hyperacusis and vice versa. However, hyperacusis and tinnitus do not always co-occur, suggesting that they have different neural origins. To study these conditions, researchers have induced cochlear damage in animal models, followed by behavioral and electrophysiological assessments. However, no study has adequately distinguished hyperacusis from tinnitus in individual animals. In this thesis, I detail the development of a novel hyperacusis and tinnitus assessment paradigm for individual animals using the pinna reflex combined with auditory brainstem responses (ABR). In the first chapter, I detail several enhancements to a computer system that ensures accurate sound presentation concurrently with capture of pinna reflex video data, as well as streamlines the subsequent data analysis. In the second chapter, the ABR, an evoked potential reflecting the summed electrical activity of cells in the auditory brainstem pathway, was assessed. Several studies suggest that ABR-wave characteristics might provide evidence of hyperacusis. ABRs were evoked using conventional and novel sound stimuli. They were then examined to look for possible indications of hyperacusis in noise overexposed guinea pigs. The present findings are discussed with several suggestions for future hyperacusis assessments.



Date: Friday, April 16, 2021

Time: 12:00 PM

Zoom: https://umich.zoom.us/j/91698183229

Chair: Dr. Susan Shore

]]>
Lecture / Discussion Mon, 05 Apr 2021 23:04:39 -0400 2021-04-16T12:00:00-04:00 2021-04-16T13:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
Life After Graduate School Seminar | I Did Not See That Coming: My Career as a Random Walk (April 16, 2021 12:00pm) https://events.umich.edu/event/83212 83212-21314481@events.umich.edu Event Begins: Friday, April 16, 2021 12:00pm
Location: Off Campus Location
Organized By: Life After Grad School Seminars

Your graduate degree may seem your greatest achievement. Congratulations. But now may be the time for something totally different. That basically describes my 46-year succession of careers: physics professor, management consultant, statistical taxation consultant, bank operations consultant, engineering information systems manager, security systems developer, public health official, entrepreneur, and corporate executive. Each transition got easier, less threatening, and more rewarding. That seemingly divergent list of positions grew directly out of my physics graduate school experience. Physics is everywhere and a Michigan Ph.D. in physics will open many doors you did not know were there. But you may have a lot of post-doctoral learning to do. Much of that learning will be about yourself. Perhaps I can be of assistance.

]]>
Workshop / Seminar Wed, 31 Mar 2021 11:07:04 -0400 2021-04-16T12:00:00-04:00 2021-04-16T13:00:00-04:00 Off Campus Location Life After Grad School Seminars Workshop / Seminar
The Spindle: Mechanical Robustness with Dynamic Parts (April 16, 2021 12:00pm) https://events.umich.edu/event/82437 82437-21098218@events.umich.edu Event Begins: Friday, April 16, 2021 12:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Host: Morgan DeSantis

]]>
Workshop / Seminar Tue, 23 Feb 2021 11:23:41 -0500 2021-04-16T12:00:00-04:00 2021-04-16T13:30:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Sophie Dumont
EEB thesis defense: Face time matters: the development of holistic face processing in paper wasps (April 19, 2021 10:00am) https://events.umich.edu/event/81962 81962-20996862@events.umich.edu Event Begins: Monday, April 19, 2021 10:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Juanita presents her thesis defense.

Please check your email or contact eeb.gradcoord@umich.edu for the passcode at least two hours prior to the event.

Image: Juanita Pardo Sanchez

]]>
Livestream / Virtual Mon, 12 Apr 2021 13:06:22 -0400 2021-04-19T10:00:00-04:00 2021-04-19T11:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Close up of a wasp face
Training Program in Organogenesis Pre- and Postdoctoral Fellowships - Request for Applications (April 19, 2021 12:00pm) https://events.umich.edu/event/82789 82789-21179555@events.umich.edu Event Begins: Monday, April 19, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

We are pleased to announce a competition for Pre-doctoral and Non-traditional postdoctoral Fellowships in Organogenesis as part of a NIH T32 Training Grant (Training Program in Organogenesis). The goal of the fellowship awards are to provide up to two years of support for outstanding scholars who wish to undertake a research project in the field of organogenesis.

Criteria used to evaluate all applications include the strength of the mentor and strength of the trainee (as evaluated by letters and CVs), the quality of the research project, and the degree to which the project fits the goals of the Training Program, and the Center for Cell Plasticity and Organ Design (CPOD).

The call for applications are for the following:

NIH T32 Predoctoral Fellowship (applicants must have achieved candidacy by the time of appointment to the training grant)
Dean’s Non-Traditional Postdoctoral Fellowship in Organogenesis (Non-Federally Funded)
The non-traditional postdoctoral fellowships are open to non-citizen and non-permanent residents, and provide partial funding for one (1) year.

Materials Due: Monday, May 17, 2021 5:00 pm Eastern Time.

Submit to Tamika Mohr at: organogenesis@umich.edu

Instructions and Application templates are attached and are available online at : https://medicine.umich.edu/dept/cpod/training-program

Faculty Mentors: If you are NOT a member of the Organogenesis faculty, but wish for a trainee in your lab to apply, you may submit a concurrent application for CPOD membership.

]]>
Careers / Jobs Fri, 05 Mar 2021 12:00:32 -0500 2021-04-19T12:00:00-04:00 2021-04-19T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Careers / Jobs
LSA Technology Services Research Support Office Hours (April 19, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270701@events.umich.edu Event Begins: Monday, April 19, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-19T14:00:00-04:00 2021-04-19T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Dr. Tendai Gadzikwa (April 19, 2021 4:00pm) https://events.umich.edu/event/83133 83133-21276892@events.umich.edu Event Begins: Monday, April 19, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry


]]>
Other Mon, 19 Apr 2021 18:15:07 -0400 2021-04-19T16:00:00-04:00 2021-04-19T17:30:00-04:00 Off Campus Location Department of Chemistry Other
RNA Seminar featuring: Jailson (Jay) Brito Querido, Ph.D. MRC Laboratory of Molecular Biology, Cambridge, UK (April 19, 2021 4:00pm) https://events.umich.edu/event/81408 81408-20893767@events.umich.edu Event Begins: Monday, April 19, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

REGISTRATION REQUIRED: https://umich.zoom.us/webinar/register/WN_78YYOhIhTbOBy2_JSdM7Wg

ABSTRACT: A key step in translational initiation is the recruitment of the 43S pre-initiation complex (43S PIC) by the cap-binding complex (eIF4F) at the 5´ end of mRNA. Eukaryotic initiation factors eIF1, eIF1A, eIF3, eIF5, and the ternary complex (TC) of eIF2–GTP–tRNAiMet bind to the 40S ribosomal subunit to form the 43S PIC. Once assembled, the 43S PIC is recruited to the cap-binding complex eIF4F at the 5´end of mRNA to form a 48S initiation complex (48S). The 48S then scans along the mRNA to locate a start codon. To understand the mechanisms involved, we determined the structure of a reconstituted human 48S using cryo-electron microscopy. The structure reveals insights into early events of translation initiation complex assembly. It reveals how eIF4F interacts with subunits of the eIF3 structural core near the mRNA exit channel in the 43S. The location of eIF4F is consistent with a slotting model of mRNA recruitment and suggests a “blind-region” that would preclude recognition of start sites upstream of the location of the P site at the point of recruitment.

KEYWORDS: mRNA, ribosome, eIF4F, eIF4A, translation

]]>
Lecture / Discussion Tue, 13 Apr 2021 12:58:40 -0400 2021-04-19T16:00:00-04:00 2021-04-19T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Jailson (Jay) Brito Querido, Ph.D.
LSA Technology Services Research Support Office Hours (April 20, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270748@events.umich.edu Event Begins: Tuesday, April 20, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-20T10:00:00-04:00 2021-04-20T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Community Action to Promote Healthy Environments: Research to Improve Air Quality & Health in Detroit (April 20, 2021 12:00pm) https://events.umich.edu/event/83634 83634-21446267@events.umich.edu Event Begins: Tuesday, April 20, 2021 12:00pm
Location: Off Campus Location
Organized By: Michigan Lifestage Environmental Exposures and Disease Center

Join us on Zoom as we discuss 'Community Action to Promote Healthy Environments: Research to Improve Air Quality and Health in Detroit' featuring Angela Reyes (Detroit Hispanic Development Corporation), Stuart Batterman (Environmental Health Sciences, UM SPH), and Amy Schulz (Health Behavior & Health Education, UM SPH). (Rescheduled from Feb 9.)

https://umich.zoom.us/j/96155698295

Webinar series organized by the Community Engagement Core and the Integrated Health Sciences Core of the Michigan Center on Lifestage Environmental Exposures and Disease (M-LEEaD). Co-sponsored by the DEI Committee of Health Behavior & Health Education and the DEI Committee of the Department of Environmental Health Sciences.

]]>
Lecture / Discussion Thu, 08 Apr 2021 13:08:12 -0400 2021-04-20T12:00:00-04:00 2021-04-20T12:50:00-04:00 Off Campus Location Michigan Lifestage Environmental Exposures and Disease Center Lecture / Discussion Community Action to Promote Healthy Environments in Detroit
Links Between Culture and Sanitation (April 20, 2021 2:00pm) https://events.umich.edu/event/83816 83816-21540180@events.umich.edu Event Begins: Tuesday, April 20, 2021 2:00pm
Location:
Organized By: Project RISHI

Dr. Balmurli Natrajan, Professor of Anthropology at William Paterson University will speak on the social practices in communities where open defecation is prevalent, toilet use, and sanitation practices in India. The discussion will center around the link between culture and accepting modern adaptations in rural communities. RSVP Here: https://docs.google.com/forms/d/e/1FAIpQLSdaJwRFl1WH56j3j604SnuPiLF5vRvgiAHais0Hse4ISjAATA/viewform

]]>
Conference / Symposium Tue, 20 Apr 2021 14:07:20 -0400 2021-04-20T14:00:00-04:00 2021-04-20T15:00:00-04:00 Project RISHI Conference / Symposium Dr. Balmurli Natrajan, Professor of Anthropology at William Paterson University
Ligand Flexibility in Surface-Inspired Cluster Chemistry (April 20, 2021 4:00pm) https://events.umich.edu/event/80732 80732-20779511@events.umich.edu Event Begins: Tuesday, April 20, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Metallic surfaces perform many chemical transformations that hold promise for the future energy economy, including N2 reduction, NH3 oxidation, and alkane synthesis, but surfaces are difficult to tune, limiting chemists’ ability to improve their efficiencies. Molecular cluster complexes inspired by surface chemistry have been studied for decades as a way to capitalize on the advantages of metallic surfaces while avoiding the scaling relationships that govern their activities. Progress in this area has been hampered, however, by the lack of ligand architectures able to provide an appropriate degree of geometric and electronic flexibility to the cluster core.
This talk will describe our use of macrocyclic, multi-nucleating ligands that have been designed to bind small metal clusters (2 4 metal atoms) in a way that mimics M–M bonding. Doing so allows for both facile electron redistribution within the cluster-ligand assembly and a high density of thermally accessible electronic states. These ligands have the added advantage of providing the geometric flexibility needed for stabilizing a range of surface-relevant species. Examples include diiron dinitrogen complexes that exist in a geometry reminiscent of the side-on binding of N2 to the Mittasch catalyst, a diiron-supported sp hybridized bridging nitride that converts into an sp3 hybridized bridging amide following hydrogen atom transfer, and the first (putative) dicobalt bridging nitride – a highly reactive species that mimics aspects of surface nitrides that develop during NH3 oxidation in the Ostwald Process. Particular attention will be paid to the electronic structures of the electrophilic diiron and dicobalt bridging nitrides, which appear to exhibit sub-valent oxidation states.


Neil Tomson (University of Pennsylvania)

]]>
Other Tue, 20 Apr 2021 18:15:06 -0400 2021-04-20T16:00:00-04:00 2021-04-20T17:00:00-04:00 Off Campus Location Department of Chemistry Other
Master's Defense: Annie Taylor (April 21, 2021 10:30am) https://events.umich.edu/event/83750 83750-21485477@events.umich.edu Event Begins: Wednesday, April 21, 2021 10:30am
Location: Off Campus Location
Organized By: Biomedical Engineering

Dopamine regulates motor performance and learning. Current models suggest that dopamine signals reward-prediction errors and/or movement vigor. These functions have been assessed predominantly using simple behavioral tasks. The role of dopamine in dexterous skill, however, is unknown. This question is important to understanding motor disorders such as Parkinson's Disease. Here we describe an experimental model to interrogate the role of dopamine release during learning and performance of dexterous skill. Fluorescent sensors dLight1.1 and GCaMP are used to monitor dopamine and calcium activity in the striatum and substantia nigra pars compacta (SNc) in rats performing skilled reaching tasks. Preliminary experiments have successfully recorded reward-associated signals in both striatum and SNc. Adaptations to the recording setup to facilitate long-term recording in larger rodents are described. These results demonstrate the viability of fiber photometry for measuring dopamine-related activity during skilled reaching tasks.



Date: Wednesday April 21, 2021

Time: 10:30 AM

Zoom: https://umich.zoom.us/j/96449273959

Chair: Dr. Dan Leventhal

]]>
Lecture / Discussion Tue, 13 Apr 2021 15:34:29 -0400 2021-04-21T10:30:00-04:00 2021-04-21T11:30:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
EEB thesis defense: Water column contributions to ecosystem production on coral reefs: an ecosystem ecology approach (April 21, 2021 1:00pm) https://events.umich.edu/event/82902 82902-21211385@events.umich.edu Event Begins: Wednesday, April 21, 2021 1:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Anjali presents her thesis defense.

Please check your email or contact eeb.gradcoord@umich.edu for the passcode at least a couple of hours prior to the event.

Illustration: John Megahan

]]>
Livestream / Virtual Fri, 16 Apr 2021 18:10:53 -0400 2021-04-21T13:00:00-04:00 2021-04-21T14:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Coral reef illustration by John Megahan
MS Defense: Can you see me now?: Optimizing SNAP- and Halo-tagging for Live Imaging in Xenopus laevis embryos (April 21, 2021 1:00pm) https://events.umich.edu/event/83523 83523-21397365@events.umich.edu Event Begins: Wednesday, April 21, 2021 1:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Mentor: Ann Miller

]]>
Workshop / Seminar Tue, 06 Apr 2021 15:02:05 -0400 2021-04-21T13:00:00-04:00 2021-04-21T14:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar micrograph of tissue
HET Brown Bag Seminar | On 1D, N = 4 Supersymmetric SYK-Type Models (April 22, 2021 12:00pm) https://events.umich.edu/event/83423 83423-21375696@events.umich.edu Event Begins: Thursday, April 22, 2021 12:00pm
Location: Off Campus Location
Organized By: Leinweber Center for Theoretical Physics

Proposals are made to describe 1D, N = 4 supersymmetrical systems that extend SYK models by compactifying from 4D, N = 1 supersymmetric Lagrangians involving chiral, vector, and tensor supermultiplets. Quartic fermionic vertices are generated via intergrals over the whole superspace, while 2(q-1)-point fermionic vertices are generated via superpotentials. The coupling constants in the superfield Lagrangians are arbitrary, and can be chosen to be Gaussian random. In that case, these 1D, N = 4 supersymmetric SYK models would exhibit Wishart-Laguerre randomness, which share the same feature among other 1D supersymmetric SYK models in literature. One difference with 1D, N = 1 and N = 2 models though, is our models contain dynamical bosons, but this is consistent with other 1D, N = 4 and 2D, N = 2 models in literature.

]]>
Lecture / Discussion Fri, 16 Apr 2021 12:24:45 -0400 2021-04-22T12:00:00-04:00 2021-04-22T13:00:00-04:00 Off Campus Location Leinweber Center for Theoretical Physics Lecture / Discussion
EEB thesis defense: Tailored vines and Taylor's law: examining vine growth on Puerto Rican coffee farms (April 22, 2021 1:00pm) https://events.umich.edu/event/83165 83165-21282853@events.umich.edu Event Begins: Thursday, April 22, 2021 1:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Simone defends her thesis.

Please check your email or contact eeb.gradcoord@umich.edu for the passcode, at least a couple of hours prior to the event.

Illustration: John Megahan

]]>
Livestream / Virtual Mon, 12 Apr 2021 12:59:41 -0400 2021-04-22T13:00:00-04:00 2021-04-22T14:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Coffee cup with vines growing around and mountains in the background
Special Joint Seminar between DCMB, Mathematics, MIDAS, and Smale Institute (April 22, 2021 1:00pm) https://events.umich.edu/event/83615 83615-21491327@events.umich.edu Event Begins: Thursday, April 22, 2021 1:00pm
Location: Off Campus Location
Organized By: DCMB Seminar Series

Abstract:

The quest to understand consciousness, once the purview of philosophers and theologians, is now actively pursued by scientists of many stripes. This talk looks at consciousness from the perspective of theoretical computer science. It formalizes the Global Workspace Theory (GWT) originated by cognitive neuroscientist Bernard Baars and further developed by him, Stanislas Dehaene, and others. Our major contribution lies in the precise formal definition of a Conscious Turing Machine (CTM), also called a Conscious AI. We define the CTM in the spirit of Alan Turing’s simple yet powerful definition of a computer, the Turing Machine (TM). We are not looking for a complex model of the brain nor of cognition but for a simple model of (the admittedly complex concept of) consciousness. After formally defining CTM, we give a formal definition of consciousness in CTM. We then suggest why the CTM has the feeling of consciousness. The reasonableness of the definitions and explanations can be judged by how well they agree with commonly accepted intuitive concepts of human consciousness, the range of related concepts that the model explains easily and naturally, and the extent of its agreement with scientific evidence.

https://umich.zoom.us/j/95135773568

]]>
Livestream / Virtual Wed, 14 Apr 2021 10:17:45 -0400 2021-04-22T13:00:00-04:00 2021-04-22T14:00:00-04:00 Off Campus Location DCMB Seminar Series Livestream / Virtual
LSA Technology Services Research Support Office Hours (April 22, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270795@events.umich.edu Event Begins: Thursday, April 22, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-22T15:00:00-04:00 2021-04-22T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Links Between Culture and Sanitation (April 22, 2021 5:00pm) https://events.umich.edu/event/83816 83816-21540179@events.umich.edu Event Begins: Thursday, April 22, 2021 5:00pm
Location: Off Campus Location
Organized By: Project RISHI

Dr. Balmurli Natrajan, Professor of Anthropology at William Paterson University will speak on the social practices in communities where open defecation is prevalent, toilet use, and sanitation practices in India. The discussion will center around the link between culture and accepting modern adaptations in rural communities. RSVP Here: https://docs.google.com/forms/d/e/1FAIpQLSdaJwRFl1WH56j3j604SnuPiLF5vRvgiAHais0Hse4ISjAATA/viewform

]]>
Conference / Symposium Tue, 20 Apr 2021 14:07:20 -0400 2021-04-22T17:00:00-04:00 2021-04-22T18:00:00-04:00 Off Campus Location Project RISHI Conference / Symposium Dr. Balmurli Natrajan, Professor of Anthropology at William Paterson University
EEB thesis defense: The effect of herbicide drift on the plant life cycle and pollinator attraction traits in four Ipomoea species: an ecological and evolutionary approach (April 23, 2021 10:00am) https://events.umich.edu/event/82964 82964-21227247@events.umich.edu Event Begins: Friday, April 23, 2021 10:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Whitney presents her thesis defense.

Check your email or contact eeb.gradcoord@umich.edu for the Zoom link at least two hours prior to the event please.

Image: Whitney White

]]>
Livestream / Virtual Fri, 16 Apr 2021 11:34:11 -0400 2021-04-23T10:00:00-04:00 2021-04-23T11:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Pink morning glories and a bee
20th Annual James V. Neel Lectureship (April 23, 2021 11:00am) https://events.umich.edu/event/83872 83872-21561727@events.umich.edu Event Begins: Friday, April 23, 2021 11:00am
Location: Off Campus Location
Organized By: Department of Human Genetics

DEPARTMENT OF HUMAN GENETICS - 20TH ANNUAL JAMES V. NEEL LECTURESHIP

“Remembrance of Things Past: Reactivation of Fetal Hemoglobin for Therapy.”

Presented by:
Stuart H. Orkin, M.D.
David G. Nathan Distinguished Professor of Pediatrics
Investigator, Howard Hughes Medical Institute
Harvard Medical School

FRIDAY, MAY 7, 2021
12:00PM - 3:00PM EST
Zoom Meeting ID: 983 1136 4189
Zoom Meeting Link: https://umich.zoom.us/j/98311364189

Sponsored by:
The Department of Human Genetics
University of Michigan Medical School
Event Website: https://medicine.umich.edu/dept/human-genetics/events/202105/20th-annual-james-v-neel-lectureship

]]>
Lecture / Discussion Fri, 23 Apr 2021 11:02:42 -0400 2021-04-23T11:00:00-04:00 2021-04-23T12:00:00-04:00 Off Campus Location Department of Human Genetics Lecture / Discussion 2021 JAMES V. NEEL LECTURESHIP FLYER
City Nature Challenge Kickoff Event (April 24, 2021 10:00am) https://events.umich.edu/event/83488 83488-21391453@events.umich.edu Event Begins: Saturday, April 24, 2021 10:00am
Location: Off Campus Location
Organized By: Museum of Natural History

Want to learn how community science data is used? Or maybe you need tech support?

Meet researchers who use community science data collected by people like you to help understand the natural world. Learn about their work and why it wouldn’t be possible without people like you. We’ll also explain more about the City Nature Challenge, how to use iNaturalist, and tips for taking good photos.

]]>
Livestream / Virtual Thu, 01 Apr 2021 11:20:05 -0400 2021-04-24T10:00:00-04:00 2021-04-24T12:00:00-04:00 Off Campus Location Museum of Natural History Livestream / Virtual
Training Program in Organogenesis Pre- and Postdoctoral Fellowships - Request for Applications (April 26, 2021 12:00pm) https://events.umich.edu/event/82789 82789-21179556@events.umich.edu Event Begins: Monday, April 26, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

We are pleased to announce a competition for Pre-doctoral and Non-traditional postdoctoral Fellowships in Organogenesis as part of a NIH T32 Training Grant (Training Program in Organogenesis). The goal of the fellowship awards are to provide up to two years of support for outstanding scholars who wish to undertake a research project in the field of organogenesis.

Criteria used to evaluate all applications include the strength of the mentor and strength of the trainee (as evaluated by letters and CVs), the quality of the research project, and the degree to which the project fits the goals of the Training Program, and the Center for Cell Plasticity and Organ Design (CPOD).

The call for applications are for the following:

NIH T32 Predoctoral Fellowship (applicants must have achieved candidacy by the time of appointment to the training grant)
Dean’s Non-Traditional Postdoctoral Fellowship in Organogenesis (Non-Federally Funded)
The non-traditional postdoctoral fellowships are open to non-citizen and non-permanent residents, and provide partial funding for one (1) year.

Materials Due: Monday, May 17, 2021 5:00 pm Eastern Time.

Submit to Tamika Mohr at: organogenesis@umich.edu

Instructions and Application templates are attached and are available online at : https://medicine.umich.edu/dept/cpod/training-program

Faculty Mentors: If you are NOT a member of the Organogenesis faculty, but wish for a trainee in your lab to apply, you may submit a concurrent application for CPOD membership.

]]>
Careers / Jobs Fri, 05 Mar 2021 12:00:32 -0500 2021-04-26T12:00:00-04:00 2021-04-26T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Careers / Jobs
LSA Technology Services Research Support Office Hours (April 26, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270702@events.umich.edu Event Begins: Monday, April 26, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-26T14:00:00-04:00 2021-04-26T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (April 27, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270749@events.umich.edu Event Begins: Tuesday, April 27, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-27T10:00:00-04:00 2021-04-27T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Earth-Abundant Molecular Catalyst Systems for the Reduction of Dioxygen and Carbon Dioxide (April 27, 2021 4:00pm) https://events.umich.edu/event/83193 83193-21292752@events.umich.edu Event Begins: Tuesday, April 27, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

The steady increase in anthropogenic carbon dioxide (CO2) emissions and corresponding atmospheric concentrations continues to generate interest in using CO2 as a liquid fuel and commodity chemical precursor. The conversion of CO2 has the dual benefit of addressing its associated negative environmental effects and the diminishing supply of petrochemical feedstocks. At the heart of efficient reductive transformations are proton-coupled electron transfer (PCET) reactions, where electrons and protons move in a concerted way to mitigate kinetic and thermodynamic penalties. Mechanistic understanding of these reactions can inform the design of optimized catalyst structures with improved activity and selectivity for specific products. Another cathodic reaction, the electrocatalytic reduction of dioxygen (O2), has relevance to the development of more efficient fuel cells and can be similarly optimized through fundamental knowledge of the underlying PCET reactions. Molecular systems are well-positioned to provide a better understanding of these reactions because of the relative fidelity with which they can be characterized, as well as the possibility for systematic testing of structure-function relationships through iterative molecular design. In addition to developing new Fe-, Mn-, and Cr-based molecular electrocatalysts for these reactions, we are exploring the use of redox mediators and flow-based electrochemical reactors to understand how these reactions can be scaled relative to comparable heterogeneous systems.

Charles Machan (University of Virginia)

]]>
Other Tue, 27 Apr 2021 18:15:06 -0400 2021-04-27T16:00:00-04:00 2021-04-27T17:15:00-04:00 Off Campus Location Department of Chemistry Other
EEB thesis defense: Comparative analysis of snake brain morphology across habitat specializations (April 28, 2021 1:00pm) https://events.umich.edu/event/82965 82965-21227248@events.umich.edu Event Begins: Wednesday, April 28, 2021 1:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Brianna defends her thesis.

Please check your email or contact eeb.gradcoord@umich.edu for the passcode at least two hours prior to the event.

]]>
Livestream / Virtual Wed, 21 Apr 2021 16:05:20 -0400 2021-04-28T13:00:00-04:00 2021-04-28T14:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual 3D CT scan of snake heads and brain
Defense: Understanding the role of Flo8 on phospholipase c regulation in pseudohyphal growth within *Saccharomyces cerevisiae* (April 29, 2021 3:00pm) https://events.umich.edu/event/83800 83800-21532316@events.umich.edu Event Begins: Thursday, April 29, 2021 3:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Pathways Master's Student
Mentor:

]]>
Workshop / Seminar Mon, 19 Apr 2021 15:15:48 -0400 2021-04-29T15:00:00-04:00 2021-04-29T16:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Yellow MCDB initials and drawing of a Microscope on a dark blue background
LSA Technology Services Research Support Office Hours (April 29, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270796@events.umich.edu Event Begins: Thursday, April 29, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-04-29T15:00:00-04:00 2021-04-29T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Master's Defense: Ivo Cerda (April 30, 2021 10:00am) https://events.umich.edu/event/83915 83915-21612995@events.umich.edu Event Begins: Friday, April 30, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Co-registering, chronic, and naturalistic assessments of the electrophysiological and behavioral features of the murine stress response can teach us how stress-behaviors are mechanistically driven by electrophysiological activity in neural circuits, how those relationships change over the course of the multi-week developing response to chronic ongoing stress, and how these changes ultimately contribute to the pathogenesis and progression of major depressive disorder and other psychiatric conditions. However, the long duration and multiplexed nature of the murine stress response have long been barriers to achieving such understandings. To address the need for technology that better captures the time progression of the murine stress response, we engineered the first-ever chronic recording system capable of gathering both behavioral and electrophysiological data in a naturalistic environment for freely-moving mice. Building from previous unpublished work at our lab, we first developed 16 units of a novel photointerrupter-based, Arduino-controlled digital phenotyping system capable of simultaneously recording 50+ behavioral metrics at a sub-second resolution continuously for weeks at a time. Subsequently, with the goal of assisting the concurrent exploration of brain mechanisms and behavior, we engineered a scaffold and cabling structure to support an ultra low-resistance commutator that allows chronic, multi-region brain electrophysiological recordings and integrated it into our digital behavioral phenotyping system. Our novel co-recording system is now fully operational and, along with allowing chronic electrophysiological recordings, supports measures of eating, drinking, food and sugary drink preference (a measure of anhedonia), locomotor activity, sleep, and actigraphy, all the while using 24/7 video tracking to allow detailed classification of behaviors at sub-second resolution. The system is also compatible with standard assessments in the field, including daily weight and fur checks. To demonstrate the duration of its co-recording capabilities, we implanted a cohort of mice with electrodes in three brain regions involved in the murine stress response – olfactory bulb, dorsal hippocampus, and medial prefrontal cortex – and recorded for five weeks. This is the first system to ever produce highly dense behavioral and electrophysiological data simultaneously and continuously over such a period of time.


Details:
DATE: Friday, April 30, 2021
TIME: 10:00 am - 12:00 pm
LOCATION: Zoom https://umich.zoom.us/j/93571968494)
Chair Committee: Brendon Watson, Tim Bruns, Cindy Chestek

]]>
Lecture / Discussion Thu, 29 Apr 2021 20:12:17 -0400 2021-04-30T10:00:00-04:00 2021-04-30T12:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
Novel upstream activation of mTORC2 by the innate immune kinase TBK1 (April 30, 2021 3:00pm) https://events.umich.edu/event/83336 83336-21344239@events.umich.edu Event Begins: Friday, April 30, 2021 3:00pm
Location: Off Campus Location
Organized By: Cell & Developmental Biology

We are pleased to announce that Aaron Seth Tooley will present his Dissertation Defense on July 31st, 2020 through a live stream virtual seminar!

Dissertation Committee:
Associate Professor Diane C. Fingar, Mentor
Professor Marina Pasca Di Magliano, Chair
Associate Professor Ken Inoki
Professor Kristen J. Verhey

]]>
Livestream / Virtual Fri, 26 Mar 2021 13:48:33 -0400 2021-04-30T15:00:00-04:00 2021-04-30T16:00:00-04:00 Off Campus Location Cell & Developmental Biology Livestream / Virtual Novel upstream activation of mTORC2 by the innate immune kinase TBK1
BME Commencement 2021 (May 1, 2021 3:30pm) https://events.umich.edu/event/83890 83890-21595415@events.umich.edu Event Begins: Saturday, May 1, 2021 3:30pm
Location: Off Campus Location
Organized By: Biomedical Engineering

PLEASE MAKE SURE TO RSVP WITH THE LINK!

BME COMMENCEMENT CEREMONY
SATURDAY, MAY 1, 2021 | 3:30 PM EDT


COMMENCEMENT CEREMONY
ZOOM @ (3:30 PM)

AFTER PARTY
Spatial Chat @ (~4:30 PM)
(AFTER THE CEREMONY)

PROGRAM
Welcome & Introduction | Lonnie Shea Ph.D.
Program Chair Remarks | Rachael Schmedlen, Ph.D., Jan Stegemann, Ph.D., & Tim Bruns, Ph.D.
Program Coordinator Remarks | Rachel Patterson & Maria Steele
Alumni Welcome and Congratulations | Scott Merz, Richard Youngblood, & Xiaotian Tan
Student Addresses | Dipra Debnath, Ivo Woldarsky, & Katy Norman
Announcing the Graduates | Melissa Wrobel Ph.D., Brendon Baker, Ph.D., James Weiland, Ph.D., & Tim Bruns, Ph.D.
Confirmation of Degrees | Lonnie Shea, Ph.D.
Congratulations and Closing | Lonnie Shea, Ph.D.
Virtual socializing & After Party | Come congratulate and socialize with your fellow graduates, families, professors, and friends following the BME Commencement Ceremony.

]]>
Ceremony / Service Tue, 27 Apr 2021 15:09:45 -0400 2021-05-01T15:30:00-04:00 Off Campus Location Biomedical Engineering Ceremony / Service BME Logo
Training Program in Organogenesis Pre- and Postdoctoral Fellowships - Request for Applications (May 3, 2021 12:00pm) https://events.umich.edu/event/82789 82789-21179557@events.umich.edu Event Begins: Monday, May 3, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

We are pleased to announce a competition for Pre-doctoral and Non-traditional postdoctoral Fellowships in Organogenesis as part of a NIH T32 Training Grant (Training Program in Organogenesis). The goal of the fellowship awards are to provide up to two years of support for outstanding scholars who wish to undertake a research project in the field of organogenesis.

Criteria used to evaluate all applications include the strength of the mentor and strength of the trainee (as evaluated by letters and CVs), the quality of the research project, and the degree to which the project fits the goals of the Training Program, and the Center for Cell Plasticity and Organ Design (CPOD).

The call for applications are for the following:

NIH T32 Predoctoral Fellowship (applicants must have achieved candidacy by the time of appointment to the training grant)
Dean’s Non-Traditional Postdoctoral Fellowship in Organogenesis (Non-Federally Funded)
The non-traditional postdoctoral fellowships are open to non-citizen and non-permanent residents, and provide partial funding for one (1) year.

Materials Due: Monday, May 17, 2021 5:00 pm Eastern Time.

Submit to Tamika Mohr at: organogenesis@umich.edu

Instructions and Application templates are attached and are available online at : https://medicine.umich.edu/dept/cpod/training-program

Faculty Mentors: If you are NOT a member of the Organogenesis faculty, but wish for a trainee in your lab to apply, you may submit a concurrent application for CPOD membership.

]]>
Careers / Jobs Fri, 05 Mar 2021 12:00:32 -0500 2021-05-03T12:00:00-04:00 2021-05-03T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Careers / Jobs
LSA Technology Services Research Support Office Hours (May 3, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270703@events.umich.edu Event Begins: Monday, May 3, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-03T14:00:00-04:00 2021-05-03T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
RNA Seminar featuring: Olivia Rissland, University of Colorado School of Medicine (May 3, 2021 4:00pm) https://events.umich.edu/event/81302 81302-20881902@events.umich.edu Event Begins: Monday, May 3, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

Registration Required: https://umich.zoom.us/webinar/register/WN_vA9zYS5nSEenf8Zmt1f-qA


ABSTRACT: The maternal-to-zygotic transition (MZT) is a conserved step in animal development, where control is passed from the maternal to the zygotic genome. Although the MZT is typically considered from its impact on the transcriptome, we previously found that three maternally deposited Drosophila RNA binding proteins (ME31B, Trailer Hitch [TRAL], and Cup) are also cleared during the MZT by unknown mechanisms. Here, we show that these proteins are degraded by the ubiquitin-proteasome system. Marie Kondo, an E2 conjugating enzyme, and the E3 CTLH ligase are required for the destruction of ME31B, TRAL, and Cup. Structure modeling of the Drosophila CTLH complex suggests that substrate recognition is different than orthologous complexes. Despite occurring hours earlier, egg activation mediates clearance of these proteins through the Pan Gu kinase, which stimulates translation of Kondo mRNA. Clearance of the maternal protein dowry thus appears to be a coordinated, but as-yet underappreciated, aspect of the MZT.

]]>
Lecture / Discussion Fri, 02 Apr 2021 16:07:11 -0400 2021-05-03T16:00:00-04:00 2021-05-03T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Olivia Rissland, Ph.D.
LSA Technology Services Research Support Office Hours (May 4, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270750@events.umich.edu Event Begins: Tuesday, May 4, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-04T10:00:00-04:00 2021-05-04T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
PhD Defense: Jonas Schollenberger (May 4, 2021 3:00pm) https://events.umich.edu/event/83855 83855-21555868@events.umich.edu Event Begins: Tuesday, May 4, 2021 3:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Cerebrovascular occlusive disease (CVOD) is a major risk factor for ischemic stroke and is characterized by the presence of stenosis in the arteries supplying the brain. The cerebral vasculature has an innate ability to compensate for flow reductions, caused by the presence of CVOD, through a network of collateral pathways in the circle of Willis (CoW). However, flow compensation is highly patient-specific and dependent on the cerebral vasculature anatomy, availability of collateral pathways, degree of stenosis and, the condition of the cerebral microcirculation and its autoregulatory response. Unfortunately, clinically available imaging tools only provide limited information on flow compensation and the underlying cerebral hemodynamics. Given the complexity of the cerebral vasculature, better tools are necessary to characterize cerebral hemodynamics and guide the risk assessment of ischemic stroke.



Image-based computational fluid dynamics (CFD) provides a powerful tool for non-invasively analyzing cerebral hemodynamics with high spatial and temporal resolutions. However, CFD modeling of cerebral hemodynamics is challenging due to the need for patient-specific data to calibrate outflow boundary conditions in the brain. In this thesis, we explore a novel strategy to quantitatively characterize cerebral hemodynamics using CFD in combination with tissue perfusion from arterial spin labeling (ASL) MRI.



Firstly, we quantified territorial perfusion in the cerebral circulation through implementing and optimizing a vessel-selective arterial spin labeling (VS-ASL) sequence. VS-ASL is generally limited by its low labeling efficiency causing poor signal-to-noise ratio. We investigated the effects of off‐resonance, pulsatility, and vessel movement, and evaluated methods to maximize labeling efficiency and overall image quality. We found that an off-resonance calibration scan in combination with cardiac-triggering significantly improved labeling efficiency and image quality. Vessel movement during the MRI protocol occurred in the majority of study subjects and needs to be accounted for to maximize labeling efficiency.



Secondly, we developed a strategy to calibrate patient-specific CFD models of cerebral blood flow. The calibration consisted of estimating the total inflow to the CoW from PC-MRI and the flow splits in the CoW from non-selective ASL perfusion images. The outflow boundary conditions were iteratively tuned to match the estimated flow splits, and the ASL-calibrated CFD model was then validated against territorial perfusion maps from VS-ASL by calculating the blood supply to each cerebral territory using Lagrangian particle tracking (LPT). We found an overall good match in a small group of subjects; particularly, the flow compensation between hemispheres was captured well by the calibrated CFD models.



Thirdly, we investigated the impact of two outflow boundary condition strategies, an ASL-based and allometric-based calibration, on cerebral hemodynamics. The ASL-based calibrated CFD analysis captured the flow compensation between hemispheres as measured with VS-ASL and lead to an approximately symmetrical flow distribution in the CoW. In contrast, the allometric-based calibrated CFD analysis was unable to capture the collateral flow compensation, which resulted in large differences in flow between hemispheres.



Finally, the clinical feasibility and capabilities of our proposed CFD analysis was demonstrated in two CVOD patients. The CFD analysis showed significant differences in cerebral hemodynamics between the patients despite similar degrees of stenosis severity, highlighting the importance of a patient-specific assessment. Comparison of pre-operative and post-operative hemodynamics in one patient resulted in only minor changes following revascularization despite severe carotid stenosis. We demonstrated that our CFD analysis can provide detailed and quantitative information about hemodynamic impact of carotid stenosis and collateral flow compensation in the circle of Willis.


Date: Tuesday, May 4, 2021

Time: 3:00 PM

Zoom: https://umich.zoom.us/j/93059726229 (Zoom link requires prior registration)

Co-Chairs: Dr. C. Alberto Figueroa and Dr. Luis Hernandez-Garcia

For Assistance or Questions
um-bme@umich.edu

]]>
Lecture / Discussion Thu, 22 Apr 2021 13:33:46 -0400 2021-05-04T15:00:00-04:00 2021-05-04T16:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
"Upgrading the Physiological Relevance of Human Brain Organoids" (May 4, 2021 4:00pm) https://events.umich.edu/event/83845 83845-21548057@events.umich.edu Event Begins: Tuesday, May 4, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

The NIH T32 Training Program in Organogenesis presents seminar series: "Emerging Concepts in Cell Signaling, Regulation, and Science Education".

The Center for Cell Plasticity and Organ Design is proud to present guest speaker Giorgia Quadrato, PhD, to speak in our last seminar in this amazing series.

Dr. Quadrato is an Associate Professor of Stem Cell Biology and Regenerative Medicine and a member of the Broad CIRM Center at the Keck School of Medicine at the University of Southern California.

The talk is entitled, "Upgrading the Physiological Relevance of Human Brain Organoids".

Trainee Host: Daysha Torres, Ph.D., Spence Lab

]]>
Lecture / Discussion Wed, 21 Apr 2021 15:37:17 -0400 2021-05-04T16:00:00-04:00 2021-05-04T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Lecture / Discussion Flyer for the Event
Bugs as Drugs: Engineering Bacterial Biotherapeutics (May 5, 2021 9:00am) https://events.umich.edu/event/83930 83930-21619144@events.umich.edu Event Begins: Wednesday, May 5, 2021 9:00am
Location: Off Campus Location
Organized By: Michigan Microbiome Project

ABSTRACT

The human body is a complex ecosystem supporting symbiotic relationships with thousands of microbial species. The ubiquity and importance of these commensal communities underscore their potential as an untapped reservoir of biological function, and recent increased interest into commensal microbial species has led to countless insights in this field. Due to these efforts, the opportunity now exists to capitalize on the increasingly sophisticated understanding of the human microbiota and expand research efforts beyond characterization, toward engineering. Commensal microbes are already perfectly suited for safe and effective habitation and colonization of various physiological niches; what remains is to harness their genomic plasticity and promote their capacity to function as robust biochemical factories. The Sirk Lab aims to engineer therapeutic capacity into commensal microorganisms to address unmet needs in human health, with a specific focus on generating strains of human gut bacterial species that can produce disease-fighting biological compounds in the intestinal tract to address key limitations with current therapeutic approaches for important diseases such as recurrent gastrointestinal infections. We are also pursuing studies focused on respiratory disease in both humans and animals of agricultural relevance.



BIO

Prof. Sirk received her AB in Biology from Occidental College in Los Angeles, CA and her Ph.D. in Molecular and Medical Pharmacology from UCLA. Her doctoral studies focused on engineering antibody fragments for targeted tumor imaging using positron emission tomography. Her postdoctoral training began at The Scripps Research Institute in La Jolla, CA, where she continued to work with engineered antibodies while also performing detailed protein engineering studies to generate site-specific nucleases and recombinases for targeted genome modifications, in the era immediately prior to the introduction of CRISPR-based gene editing technology. She then pursued further postdoctoral training at Stanford University where she first began to explore the world of commensal microbes by studying the role that gut bacteria play in the activation of drug-like dietary molecules. At the University of Illinois, her research group aims to leverage the power of protein engineering, therapeutic biomolecules, and the ever-expanding opportunities of commensal microbial species and communities to address critical needs in disease prevention and treatment in humans, animals, insects, and plants.

HOSTS:
Matthew Ostrowski
Thomas Schmidt

https://umich.zoom.us/j/96357036922

]]>
Workshop / Seminar Fri, 30 Apr 2021 12:26:40 -0400 2021-05-05T09:00:00-04:00 2021-05-05T10:00:00-04:00 Off Campus Location Michigan Microbiome Project Workshop / Seminar MMP logo
City Nature Challenge Virtual ID Parties (May 5, 2021 6:00pm) https://events.umich.edu/event/83489 83489-21391454@events.umich.edu Event Begins: Wednesday, May 5, 2021 6:00pm
Location: Off Campus Location
Organized By: Museum of Natural History

Join Natural Areas Preservation staff, U-M biologists, museum professionals, and community naturalists to identify plants, animals, and everything else observed during the first half of the City Nature Challenge. Share your most exciting observations and learn about biodiversity right in your own backyard. There is one session for plants and fungi (flora) and one for animals (fauna).

Flora: May 5, 2021 6:00 p.m - 7:00 p.m. EDT
Register for Flora session here: https://umich.zoom.us/meeting/register/tJ0qdO-gpjwiHtXt2vQCCjfVmSm_O8BsPZPn

Fauna: May 7, 2021 6:00 p.m - 7:00 p.m. EDT
Register for Fauna session here: https://umich.zoom.us/meeting/register/tJAkdu-urTMvHd07Eiswg5TdLY5iP7GssRAF

]]>
Livestream / Virtual Thu, 01 Apr 2021 11:26:08 -0400 2021-05-05T18:00:00-04:00 2021-05-05T19:00:00-04:00 Off Campus Location Museum of Natural History Livestream / Virtual
LSA Technology Services Research Support Office Hours (May 6, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270797@events.umich.edu Event Begins: Thursday, May 6, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-06T15:00:00-04:00 2021-05-06T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
PhD Defense: Elissa Welle (May 7, 2021 10:00am) https://events.umich.edu/event/83883 83883-21587612@events.umich.edu Event Begins: Friday, May 7, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Neural interfaces create a connection between neural structures in the body and external electronic devices. Brain-machine interfaces and bioelectric medicine therapies rely on the seamless integration of neural interfaces with the brain, nerves, or spinal cord. However, conventional neural interfaces cannot meet the demands of high channel count, signal fidelity, and signal longevity that these applications require.



In this thesis we characterized the damage resulting from conventional Utah arrays after multiple years of implantation in the cortex of a non-human primate. The neuron density around the electrode shanks was compared to the neuron density of nearby healthy tissue, finding a 73% loss in density around the electrodes. The explanted arrays were imaged and characterized for forms of electrode surface inconsistency. Coating cracks, tip breakage, and parylene cracks were the most common inconsistency. A significantly higher number of tip breakage and coating crack occurrences were found on the edges of the arrays as compared to the middle. In this work, we made clear the need for a minimally damaging alternative to the Utah electrode array.



Neural interfaces composed of carbon fiber electrodes, with a diameter of 6.8 microns, could enable a more seamless integration with the body. Previous work resulted in an array of individuated carbon fiber electrodes that could record reliably high signal-to-noise ratio neural signals from the brain for several months. However, the carbon fiber arrays were limited by only 30% of the electrodes recording neural signals, despite inducing very minimal inflammation. Additionally, it was relatively unknown if carbon fibers would make suitable long-term peripheral neural interfaces. Here, we illustrate the potential of carbon fiber electrodes to meet the needs of a variety of neural applications.



First, we optimized state-of-the-art carbon fiber electrodes to reliably record single unit electrophysiology from the brain. By analyzing the previous manufacturing process, the cause of the low recording yield of the carbon fiber arrays was identified as the consistency of the electrode tip. A novel laser cutting technique was developed to produce a consistent carbon fiber tip geometry, resulting in a near tripling of recording yield of high amplitude chronic neural signals. The longevity of the carbon fiber arrays was also addressed. The conventional polymer coating was compared against platinum iridium coating and an oxygen plasma treatment, both of which outperformed the polymer coating. In this work, we customized carbon fiber electrodes for reliable, long-term neural recording.



Secondly, we translated the carbon fiber technology from the brain to the periphery in an architecture appropriate for chronic implantation. The insertion of carbon fibers into the stiffer structures in the periphery is enabled by sharpening the carbon fibers. The sharpening process combines a butane flame to sharpen the fibers with a water bath to protect the base of the array. Sharpened carbon fibers recorded electrophysiology from the rat vagus nerve and feline dorsal root ganglia, both structures being important targets for bioelectric medicine therapies. The durability of carbon fibers was also displayed when partially embedded carbon fibers in medical-grade silicone withstood thousands of repeated bends without fracture. This work showed that carbon fibers have the electrical and structural properties necessary for chronic application.



Overall, this work highlights the vast potential of carbon fiber electrodes. Through this thesis, future brain-machine interfaces and bioelectric medicine therapies may utilize sub-cellular electrodes such as carbon fibers in medical applications.



Date: Friday, May 7, 2021

Time: 10:00 AM

Zoom: https://umich.zoom.us/j/95839545566 (Zoom link requires prior registration)

Chair: Dr. Cynthia Chestek

For Assistance or Questions
um-bme@umich.edu

]]>
Lecture / Discussion Mon, 26 Apr 2021 17:03:39 -0400 2021-05-07T10:00:00-04:00 2021-05-07T11:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
City Nature Challenge Virtual ID Parties (May 7, 2021 6:00pm) https://events.umich.edu/event/83489 83489-21391455@events.umich.edu Event Begins: Friday, May 7, 2021 6:00pm
Location: Off Campus Location
Organized By: Museum of Natural History

Join Natural Areas Preservation staff, U-M biologists, museum professionals, and community naturalists to identify plants, animals, and everything else observed during the first half of the City Nature Challenge. Share your most exciting observations and learn about biodiversity right in your own backyard. There is one session for plants and fungi (flora) and one for animals (fauna).

Flora: May 5, 2021 6:00 p.m - 7:00 p.m. EDT
Register for Flora session here: https://umich.zoom.us/meeting/register/tJ0qdO-gpjwiHtXt2vQCCjfVmSm_O8BsPZPn

Fauna: May 7, 2021 6:00 p.m - 7:00 p.m. EDT
Register for Fauna session here: https://umich.zoom.us/meeting/register/tJAkdu-urTMvHd07Eiswg5TdLY5iP7GssRAF

]]>
Livestream / Virtual Thu, 01 Apr 2021 11:26:08 -0400 2021-05-07T18:00:00-04:00 2021-05-07T19:00:00-04:00 Off Campus Location Museum of Natural History Livestream / Virtual
Training Program in Organogenesis Pre- and Postdoctoral Fellowships - Request for Applications (May 10, 2021 12:00pm) https://events.umich.edu/event/82789 82789-21179558@events.umich.edu Event Begins: Monday, May 10, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

We are pleased to announce a competition for Pre-doctoral and Non-traditional postdoctoral Fellowships in Organogenesis as part of a NIH T32 Training Grant (Training Program in Organogenesis). The goal of the fellowship awards are to provide up to two years of support for outstanding scholars who wish to undertake a research project in the field of organogenesis.

Criteria used to evaluate all applications include the strength of the mentor and strength of the trainee (as evaluated by letters and CVs), the quality of the research project, and the degree to which the project fits the goals of the Training Program, and the Center for Cell Plasticity and Organ Design (CPOD).

The call for applications are for the following:

NIH T32 Predoctoral Fellowship (applicants must have achieved candidacy by the time of appointment to the training grant)
Dean’s Non-Traditional Postdoctoral Fellowship in Organogenesis (Non-Federally Funded)
The non-traditional postdoctoral fellowships are open to non-citizen and non-permanent residents, and provide partial funding for one (1) year.

Materials Due: Monday, May 17, 2021 5:00 pm Eastern Time.

Submit to Tamika Mohr at: organogenesis@umich.edu

Instructions and Application templates are attached and are available online at : https://medicine.umich.edu/dept/cpod/training-program

Faculty Mentors: If you are NOT a member of the Organogenesis faculty, but wish for a trainee in your lab to apply, you may submit a concurrent application for CPOD membership.

]]>
Careers / Jobs Fri, 05 Mar 2021 12:00:32 -0500 2021-05-10T12:00:00-04:00 2021-05-10T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Careers / Jobs
LSA Technology Services Research Support Office Hours (May 10, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270704@events.umich.edu Event Begins: Monday, May 10, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-10T14:00:00-04:00 2021-05-10T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (May 11, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270751@events.umich.edu Event Begins: Tuesday, May 11, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-11T10:00:00-04:00 2021-05-11T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Lagranian Control at Large and Local Scales in Mixed Autonomy Traffic Flows (May 13, 2021 1:00pm) https://events.umich.edu/event/83812 83812-21538223@events.umich.edu Event Begins: Thursday, May 13, 2021 1:00pm
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

The CCAT Distinguished Lecture Series returns this May with Professor Alexandre Bayen, the Liao-Cho Professor of Engineering at UC Berkeley! This talk investigates Lagrangian (mobile) control of traffic flow at local scale (vehicular level), and how self-driving vehicles will change traffic flow patterns. Professor Bayen describes approaches based on deep, reinforcement learning presented in the context of enabling mixed-autonomy mobility. This lecture also explores the gradual and complex integration of automated vehicles into the existing traffic system. Attendees will learn the potential impact of a small fraction of automated vehicles on low-level traffic flow dynamics, using novel techniques in model-free, deep reinforcement learning, in which the automated vehicles act as mobile (Lagrangian) controllers to traffic flow.

Illustrative examples will be presented in the context of a new, open-source computational platform called FLOW, which integrates state-of-the-art microsimulation tools with deep-RL libraries on AWS EC2. Interesting behavior of mixed autonomy traffic will be revealed in the context of emergent behavior of traffic: https://flow-project.github.io/

]]>
Livestream / Virtual Tue, 20 Apr 2021 10:42:19 -0400 2021-05-13T13:00:00-04:00 2021-05-13T14:00:00-04:00 Off Campus Location Center for Connected and Automated Transportation Livestream / Virtual Decorative Image
LSA Technology Services Research Support Office Hours (May 13, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270798@events.umich.edu Event Begins: Thursday, May 13, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-13T15:00:00-04:00 2021-05-13T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Training Program in Organogenesis Pre- and Postdoctoral Fellowships - Request for Applications (May 17, 2021 12:00am) https://events.umich.edu/event/82789 82789-21177575@events.umich.edu Event Begins: Monday, May 17, 2021 12:00am
Location: Off Campus Location
Organized By: Center for Cell Plasticity and Organ Design

We are pleased to announce a competition for Pre-doctoral and Non-traditional postdoctoral Fellowships in Organogenesis as part of a NIH T32 Training Grant (Training Program in Organogenesis). The goal of the fellowship awards are to provide up to two years of support for outstanding scholars who wish to undertake a research project in the field of organogenesis.

Criteria used to evaluate all applications include the strength of the mentor and strength of the trainee (as evaluated by letters and CVs), the quality of the research project, and the degree to which the project fits the goals of the Training Program, and the Center for Cell Plasticity and Organ Design (CPOD).

The call for applications are for the following:

NIH T32 Predoctoral Fellowship (applicants must have achieved candidacy by the time of appointment to the training grant)
Dean’s Non-Traditional Postdoctoral Fellowship in Organogenesis (Non-Federally Funded)
The non-traditional postdoctoral fellowships are open to non-citizen and non-permanent residents, and provide partial funding for one (1) year.

Materials Due: Monday, May 17, 2021 5:00 pm Eastern Time.

Submit to Tamika Mohr at: organogenesis@umich.edu

Instructions and Application templates are attached and are available online at : https://medicine.umich.edu/dept/cpod/training-program

Faculty Mentors: If you are NOT a member of the Organogenesis faculty, but wish for a trainee in your lab to apply, you may submit a concurrent application for CPOD membership.

]]>
Careers / Jobs Fri, 05 Mar 2021 12:00:32 -0500 2021-05-17T00:00:00-04:00 2021-05-17T17:00:00-04:00 Off Campus Location Center for Cell Plasticity and Organ Design Careers / Jobs
EEB student evaluation seminar: Navigating the labyrinth: testing for ecomorphological correlations and convergence in the Serpentes inner ear (May 17, 2021 9:00am) https://events.umich.edu/event/83975 83975-21619273@events.umich.edu Event Begins: Monday, May 17, 2021 9:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Taylor presents her preliminary seminar.

Please check your email or contact eeb.gradcoord@umich.edu at least two hours prior to the event for the passcode.

Images: Taylor West

]]>
Livestream / Virtual Mon, 10 May 2021 14:27:30 -0400 2021-05-17T09:00:00-04:00 2021-05-17T10:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual 3D CT scans of snake heads from UMMZ collection. Their inner ear and suspensorium structures are segmented and colored. Images: Taylor West
LSA Technology Services Research Support Office Hours (May 17, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270705@events.umich.edu Event Begins: Monday, May 17, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-17T14:00:00-04:00 2021-05-17T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
RNA Seminar featuring: Thomas Martinez, Salk Institute for Biological Studies (May 17, 2021 4:00pm) https://events.umich.edu/event/81303 81303-20881903@events.umich.edu Event Begins: Monday, May 17, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

Registration Required: https://umich.zoom.us/webinar/register/WN_90RkcQTGQZa7ifQ8kbSdNQ

KEYOWORDS: microprotein, smORF, ribosome profiling

ABSTRACT: Functional protein-coding small open reading frames (smORFs) are emerging as an important class of genes. Several smORF-encoded microproteins have been characterized and implicated in a variety of critical processes, including regulation of mRNA decay, DNA repair, and muscle formation. Thus, rigorous and comprehensive annotation of protein-coding smORFs is critical to our understanding of basic biology and physiology, as well as disease. We recently developed an improved workflow that integrates de novo transcriptome assembly and ribosome profiling to overcome obstacles with previous methods to more confidently annotate thousands of novel smORFs across multiple human cell lines, including hundreds encoded on putative non-coding RNAs. Over 1,500 smORFs are found in two or more cell lines, and ~40% lack a canonical AUG start codon. Evolutionary conservation analyses suggest that hundreds of smORF-encoded microproteins are likely functional. We also find that smORF-derived peptides are detectable on human leukocyte antigen complexes, positioning smORFs as a source of novel antigens. The annotation of protein-coding smORFs radically alters the current view of the human genome’s coding capacity and will provide a rich pool of unexplored, functional human genes.

BIO: Thomas received his B.S. in Biological Engineering from MIT and trained in Prof. JoAnne Stubbe’s laboratory, where he studied the mechanism of ribonucleotide reductase. He then recieved his Ph.D. in Biochemistry & Molecular Biophysics from Caltech as an NIH NRSA predoctoral fellow under the mentorship of Prof. Peter Dervan. His thesis work focused primarily on characterizing the effects of DNA binding pyrrole-imidazole polyamides on DNA replication in prostate cancer cells. Thomas is currently an NIH NRSA postdoctoral fellow in Prof. Alan Saghatelian’s laboratory, where he has developed an integrative platform combining ribosome profiling and de novo transcriptome assembly to discover functional smORF encoded microproteins in the human genome.

]]>
Lecture / Discussion Wed, 14 Apr 2021 12:39:54 -0400 2021-05-17T16:00:00-04:00 2021-05-17T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Thomas Martinez, Salk Institute for Biological Studies
EEB dissertation defense: Single cell sequencing facilitates genome-enabled biology in uncultured fungi and resolves deep branches on the fungal tree of life (May 18, 2021 10:00am) https://events.umich.edu/event/83864 83864-21555877@events.umich.edu Event Begins: Tuesday, May 18, 2021 10:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Kevin defends his dissertation.

Please check back closer to the event for the Zoom link and see your email or contact eeb.gradcoord@umich.edu for the passcode at least two hours prior.

]]>
Livestream / Virtual Tue, 04 May 2021 15:00:01 -0400 2021-05-18T10:00:00-04:00 2021-05-18T11:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual uncultured fungi under magnification, phylogeny, graphs and colorful designs
LSA Technology Services Research Support Office Hours (May 18, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270752@events.umich.edu Event Begins: Tuesday, May 18, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-18T10:00:00-04:00 2021-05-18T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
TBA (May 18, 2021 4:00pm) https://events.umich.edu/event/83070 83070-21262989@events.umich.edu Event Begins: Tuesday, May 18, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Chembio
Nicholas Ingolia (University of California, Berkeley)

]]>
Other Tue, 18 May 2021 18:15:05 -0400 2021-05-18T16:00:00-04:00 2021-05-18T17:00:00-04:00 Off Campus Location Department of Chemistry Other
Microbiome Seminar: Developing and Applying a Microdroplet Co-Cultivation and Analysis Toolbox for Elucidating Microbiomes (May 19, 2021 9:00am) https://events.umich.edu/event/84064 84064-21619785@events.umich.edu Event Begins: Wednesday, May 19, 2021 9:00am
Location: Off Campus Location
Organized By: Michigan Microbiome Project

Speaker: Xiaoxia (Nina) Lin
Associate Professor, Dept. Chemical Engineering

Speaker Profile: Professor Lin’s research lies at the intersection of biology and engineering with a focus on microbial systems, particularly microbial communities, using systems biology and synthetic biology approaches. Her lab aims to employ engineering tools and skills such as microfluidics and quantitative modeling to help unlock mysteries of complex natural microbial communities, especially those closely associated with environment and health issues (e.g. human microbiome). In parallel, the research group exploits design principles nature utilizes and develops synthetic microbial consortia technologies to address critical needs faced by our society such as sustainable biofuel and chemical production.

Abstract: Microbes are everywhere in nature and they live in diverse communities that show remarkable metabolic capabilities and robustness. One research thrust in my lab has been to employ engineering related tools to study these naturally occurring microbial consortia in order to discover underlying cellular and molecular mechanisms. In particular, we have been developing a technological pipeline, based on nanoliter-scale microfluidic droplets, to co-cultivate sub-communities and characterize member interactions that shape the community structure and function. In this talk, I will present a number of technological modules we have created and are developing. I’ll also discuss how we are applying this toolbox, jointly with our collaborators, to the investigation of several microbiomes closely related to human health or the environment.

Zoom Meeting: https://umich.zoom.us/j/92773919973

]]>
Workshop / Seminar Mon, 17 May 2021 14:12:26 -0400 2021-05-19T09:00:00-04:00 2021-05-19T10:00:00-04:00 Off Campus Location Michigan Microbiome Project Workshop / Seminar Michigan Microbiome Project
CGIS Winter Advising (May 19, 2021 12:00pm) https://events.umich.edu/event/83938 83938-21619171@events.umich.edu Event Begins: Wednesday, May 19, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Global and Intercultural Study

As studying abroad becomes more of a possibility for U-M students, particularly for Winter 2022, CGIS will be offering a 2-day Winter Advising event where students can learn more about major-specific programs such as programs in the environment, pre-health, and public health and interest-specific program sessions such as studying abroad in the UK and English-Taught programs in Asia to name few. The LSA Scholarship Office and the Office of Financial Aid will join us on May 20th to help answer questions you may have on funding your semester program abroad as well as walking you through the application process! First Step sessions will be offered each day of the event as well. Each info session will be interactive. Each session will offer an opportunity to interact with advisors and address questions or concerns you may have regarding study abroad. To get a general idea of participation, please RSVP below and select info sessions that you'd be interested in. We'll send you a Zoom link as we get closer to the event!

DISCLAIMER: With each passing term, a small yet increasing number of our programs seem to offer the possibility of receiving students, so CGIS proceeded with very cautious optimism that students will be able to study abroad in the coming academic year. CGIS and the University of Michigan continue to closely monitor the COVID-19 (Coronavirus) situation as it develops worldwide. Parents and other concerned parties who would like to receive this information should ask their students to share the updates with them. Students planning to participate in CGIS programs worldwide are advised to continue to closely monitor the latest developments and to adhere to any national and international public health directives issued by their host country or institution. CGIS will contact students who have opened or submitted an application to a CGIS program if and when updates are available.

]]>
Presentation Fri, 30 Apr 2021 16:02:10 -0400 2021-05-19T12:00:00-04:00 2021-05-19T14:30:00-04:00 Off Campus Location Center for Global and Intercultural Study Presentation Flyer
Microbial Masterpieces (May 19, 2021 3:30pm) https://events.umich.edu/event/83989 83989-21619308@events.umich.edu Event Begins: Wednesday, May 19, 2021 3:30pm
Location: Off Campus Location
Organized By: Digital Media Commons

The recipient of the Experiments in Translation Grant, “Microbial Masterpieces” is a continuously evolving project aiming to communicate the importance of microorganisms to humanity and the planet. Our featured attraction is a giant Winogradsky Panel in the Duderstadt Center Gallery, which houses a brightly colored, continuously changing biofilm. In this presentation, we will share beautiful images and time lapses of the Winogradsky Panel; discuss the science underlying the Panel; and reflect on the importance of art in science communication. Additionally, we will share our progress in trying to make our project accessible to the blind and visually-impaired community through tactile and audio experiences.

The MM team includes: Erica Gardner (School for Environment and Sustainability; College of Engineering); Anna Urso (School for Environment and Sustainability); Bruna lunes Sanches (Taubman College of Architecture + Urban Planning)

Register in advance for this webinar:
https://umich.zoom.us/webinar/register/WN_Vm_HuWMRSMyE31cZzwCv7Q

After registering, you will receive a confirmation email containing information about joining the webinar.

]]>
Presentation Thu, 06 May 2021 18:25:54 -0400 2021-05-19T15:30:00-04:00 2021-05-19T17:00:00-04:00 Off Campus Location Digital Media Commons Presentation Winogradsky Panel
Prechter-Tam Bipolar Seminar Series: Pluripotent Stem Cell Models to Study Bipolar Disorder (May 20, 2021 11:30am) https://events.umich.edu/event/83971 83971-21619270@events.umich.edu Event Begins: Thursday, May 20, 2021 11:30am
Location: Off Campus Location
Organized By: Heinz C. Prechter Bipolar Research Program

"Characterization of stem cell-derived exosomes in bipolar disorder and their impact on recipient cells."

Bipolar disorder is a condition that involves the human brain. There is no easy access to brain tissue from living people.  Using induced pluripotent stem cells offers the first opportunity to model the activity of brain and nerve cells from individuals with bipolar disorder. Samples from skin are ‘induced’ to form pluripotent stem cells that can subsequently be prompted to grow into nerve cells.  Shortly after this technology was developed, the Prechter Bipolar Research Program expanded to include Sue O’Shea, PhD, Professor, in the Department of Cell and Developmental Biology who works on pluripotent stem cells.  Individuals with a history of bipolar disorder and non-bipolar controls provided skin samples that were grown into stem cells and then nerve cells.  Over the past decade this work has expanded to include a multisite collaboration with the University of Pennsylvania, the Salk Institute, Sanford Burnham Institute, and Janssen Pharmaceuticals.  Several significant findings have included the consistent characteristic of premature excitability of nerve cells derived from individuals with bipolar disorder, the abnormal behaviors of astrocytes, and the apparent dysfunction of exosomes.  These patterns are leading towards the identification of target pathways that may be suitable for pharmaceutical intervention. 

U-M PANEL DISCUSSION

Panel Moderator: Melvin G. McInnis, M.D., FRCPsych -
Director, Heinz C. Prechter Bipolar Research Program

Jianping Fu, Ph.D. - Professor, Biomedical Engineering

Paul Jenkins, Ph.D. - Professor, Pharmacology

Stephanie Bielas, Ph.D. - Associate Professor of Human Genetics

SPECIAL GUESTS

Kristen Brennand, Ph.D. - Professor of Medicine, Yale University

Paola Arlotta, Ph.D. - Golub Family Professor of Stem Cell and Regenerative Biology, Harvard University

]]>
Presentation Wed, 05 May 2021 12:52:06 -0400 2021-05-20T11:30:00-04:00 2021-05-20T12:30:00-04:00 Off Campus Location Heinz C. Prechter Bipolar Research Program Presentation Prechter-Tam Bipolar Seminar Banner
CGIS Winter Advising (May 20, 2021 12:00pm) https://events.umich.edu/event/83938 83938-21619172@events.umich.edu Event Begins: Thursday, May 20, 2021 12:00pm
Location: Off Campus Location
Organized By: Center for Global and Intercultural Study

As studying abroad becomes more of a possibility for U-M students, particularly for Winter 2022, CGIS will be offering a 2-day Winter Advising event where students can learn more about major-specific programs such as programs in the environment, pre-health, and public health and interest-specific program sessions such as studying abroad in the UK and English-Taught programs in Asia to name few. The LSA Scholarship Office and the Office of Financial Aid will join us on May 20th to help answer questions you may have on funding your semester program abroad as well as walking you through the application process! First Step sessions will be offered each day of the event as well. Each info session will be interactive. Each session will offer an opportunity to interact with advisors and address questions or concerns you may have regarding study abroad. To get a general idea of participation, please RSVP below and select info sessions that you'd be interested in. We'll send you a Zoom link as we get closer to the event!

DISCLAIMER: With each passing term, a small yet increasing number of our programs seem to offer the possibility of receiving students, so CGIS proceeded with very cautious optimism that students will be able to study abroad in the coming academic year. CGIS and the University of Michigan continue to closely monitor the COVID-19 (Coronavirus) situation as it develops worldwide. Parents and other concerned parties who would like to receive this information should ask their students to share the updates with them. Students planning to participate in CGIS programs worldwide are advised to continue to closely monitor the latest developments and to adhere to any national and international public health directives issued by their host country or institution. CGIS will contact students who have opened or submitted an application to a CGIS program if and when updates are available.

]]>
Presentation Fri, 30 Apr 2021 16:02:10 -0400 2021-05-20T12:00:00-04:00 2021-05-20T14:30:00-04:00 Off Campus Location Center for Global and Intercultural Study Presentation Flyer
LSA Technology Services Research Support Office Hours (May 20, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270799@events.umich.edu Event Begins: Thursday, May 20, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-20T15:00:00-04:00 2021-05-20T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (May 24, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270706@events.umich.edu Event Begins: Monday, May 24, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-24T14:00:00-04:00 2021-05-24T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (May 25, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270753@events.umich.edu Event Begins: Tuesday, May 25, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-25T10:00:00-04:00 2021-05-25T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Clinical Simulation Center Brown Bag Discussion (May 25, 2021 3:00pm) https://events.umich.edu/event/84097 84097-21620331@events.umich.edu Event Begins: Tuesday, May 25, 2021 3:00pm
Location:
Organized By: Department of Learning Health Sciences

"Omni II Infant, Safe Patient Handling Obesity suit, UH Training Room and Juno-Med fidelity manikin"

Our team is planning four short lightning talks, highlighting some new equipment and additions to our courses.

This will be a Zoom meeting.
https://umich.zoom.us/j/97929340876

Dial by your location
+1 646 876 9923
Meeting ID: 979 2934 0876

Find your local number: https://umich.zoom.us/u/ac04eNX6TC

]]>
Lecture / Discussion Tue, 25 May 2021 15:21:30 -0400 2021-05-25T15:00:00-04:00 2021-05-25T16:00:00-04:00 Department of Learning Health Sciences Lecture / Discussion Mod CCO, DLHS Clinical Simulation Center
PhD Defense: Edward Peter Washabaugh IV (May 27, 2021 10:00am) https://events.umich.edu/event/84050 84050-21619709@events.umich.edu Event Begins: Thursday, May 27, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Injuries to the neuromusculoskeletal systems often result in muscle weakness, abnormal coordination strategies, and gait impairments. Functional resistance training during walking—where a patient walks while a device increases loading on the leg—is an emerging approach to combat these symptoms. While simple passive devices (i.e., ankle weights and resistance bands) can be applied for this training, rehabilitation robots have more potential upside because they can be controlled to treat multiple gait abnormalities and can be monitored by clinicians. However, the cost of conventional robotic devices limits their use in the clinical or home setting. Hence, in this dissertation, we designed, developed, and tested passive and semi-passive wearable exoskeleton devices as a low-cost solution for providing controllable/configurable functional resistance training during walking.


We developed and tested two passive exoskeleton devices for providing resistance to walking and tested their effects on able-bodied participants and stroke survivors. First, we created a patented device that used a passive magnetic brake to provide a viscous (i.e., velocity-dependent) resistance to the knee. The resistive properties of the device could be placed under computer control (i.e., made semi-passive) to control resistance in real-time. Next, we created a passive exoskeleton that provided an elastic (i.e., position-dependent) resistance. While not controllable, this device was highly configurable. Meaning it could be used to provide resistance to joint flexion, extension, or to both (i.e., bidirectionally). Human subjects testing with these devices indicated they increased lower-extremity joint moments, powers, and muscle activation during training. Training also resulted in significant aftereffects—a potential indicator of therapeutic effectiveness—once the resistance was removed. A separate experiment indicated that individuals often kinematically slack (i.e., reduce joint excursions to minimize effort) when resistance is added to the limb. We also found that providing visual feedback of joint angles during training significantly increased muscle activation and kinematic aftereffects (i.e., reduced slacking).


With passive devices, the type of passive element used largely dictates the muscle groups, types of muscle contraction, joint actions, and the phases of gait when a device is able to apply resistance. To examine this issue, we compared the training effects of viscous and elastic devices that provided bidirectional resistance to the knee during gait. Additionally, we compared training with viscous resistances at the hip and knee joints. While the resistance type and targeted joint altered moments, powers, and muscle activation patterns, these methods did not differ in their ability to produce aftereffects, alter neural excitability, or induce fatigue in the leg muscles. While this may indicate that the resistance type does not have a large effect on functional resistance training during walking, it is possible that an extended training with these devices could produce a different result.


Lastly, we used musculoskeletal modeling in OpenSim to directly compare several strategies that have been used to provide functional resistance training to gait in the clinic or laboratory setting. We found that devices differed in their ability to alter gait parameters during walking. Hence, these findings could help clinicians when selecting a resistive strategy for their patients, or engineers when designing new devices or control schemes.



Date: Thursday, May 27, 2021

Time: 10:00 AM

Zoom: https://umich.zoom.us/meeting/register/tJIufumrrDgtHd3z5Jg3Y_BG4ZC70OPrjTjk (Zoom link requires prior registration)

Chair: Dr. Chandramouli Krishnan

]]>
Lecture / Discussion Fri, 14 May 2021 13:49:26 -0400 2021-05-27T10:00:00-04:00 2021-05-27T11:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
LSA Technology Services Research Support Office Hours (May 27, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270800@events.umich.edu Event Begins: Thursday, May 27, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-27T15:00:00-04:00 2021-05-27T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (May 31, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270707@events.umich.edu Event Begins: Monday, May 31, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-05-31T14:00:00-04:00 2021-05-31T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (June 1, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270754@events.umich.edu Event Begins: Tuesday, June 1, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-01T10:00:00-04:00 2021-06-01T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (June 3, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270801@events.umich.edu Event Begins: Thursday, June 3, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-03T15:00:00-04:00 2021-06-03T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Lilly Outreach Event (June 3, 2021 4:00pm) https://events.umich.edu/event/84051 84051-21619715@events.umich.edu Event Begins: Thursday, June 3, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Merestinib is Lilly’s multi-kinase inhibitor tested in Phase II clinical trials for cancers. This talk describes the process research of merestinib, highlighting the route scouting of an advanced indazole intermediate and process analytical technology (PAT) applied on the late-stage chemical transformations for the multi-kilogram synthesis of the active pharmaceutical ingredient (API) using small volume continuous-flow (SVC).

]]>
Other Thu, 03 Jun 2021 18:15:06 -0400 2021-06-03T16:00:00-04:00 2021-06-03T17:30:00-04:00 Off Campus Location Department of Chemistry Other
PhD Defense: William Y. Wang (June 4, 2021 12:30pm) https://events.umich.edu/event/84102 84102-21620248@events.umich.edu Event Begins: Friday, June 4, 2021 12:30pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Mechanoreciprocity in cell migration is an emerging concept describing the dynamic, bi-directional interactions between migrating cells and the surrounding extracellular matrix (ECM) they negotiate. Migrating cells not only sense and adapt to biochemical and biophysical ECM cues, but also, exert forces, deposit matrix, and secrete chemokines, matrix metalloproteinases, and matrix crosslinking enzymes that dynamically alter the same ECM properties known to regulate cell migration. Due to limitations in standard cell migration assays, how matrix properties influence cell migration and in turn, how cells influence matrix properties, has previously been studied as separate processes. However, observations from development, wound healing, and a variety of disease processes highlight the interdependency and iterative relationship between cell migration and ECM. An improved understanding of the underlying mechanisms that orchestrate the coevolution of migrating cells and ECM will aid in tissue engineering and regenerative medicine efforts to guide repair fibroblasts to regenerate wound beds, direct collective endothelial cell migration to vascularize ischemic or engineered tissue grafts and confine otherwise metastatic cancer cells to the primary tumor. Thus, the focus of this dissertation is to design biomimetic microsystems that afford investigation of cell migration mechanoreciprocity with a focus on fibroblasts, endothelial cells, and cancer cells.



First, this thesis investigated how single mesenchymal cells (fibroblasts and cancer cells) migrate in fibrous stromal tissue settings, such as in trans-stromal cancer cell migration during metastasis. To model fibrous stromal tissue, 3D fiber networks were electrospun over microfabricated wells to define ECM mechanics. Independently tuning alignment and stiffness of these matrices resulted in two phenotypically distinct cell migration modes. In contrast to stiff matrices where cells migrated continuously in a traditional mesenchymal fashion, cells in deformable matrices stretched matrix fibers to store elastic energy; subsequent adhesion failure triggered sudden matrix recoil and rapid cell translocation (termed slingshot migration). Across a variety of cell types, traction force measurements revealed a relationship between cell contractility and the matrix stiffness where slingshot migration mode occurred optimally.



Next, this thesis describes how microenvironmental cues influence collective endothelial cell migration during sprouting angiogenesis towards the design of pro-angiogenic biomaterials. This work employed a multiplexed angiogenesis-on-a-chip platform to assess the chemokine-directed 3D invasion of endothelial cells from a lumenized parent vessel into user-defined ECM. By tuning soluble and physical cues of the ECM, this work identified how 1) functional angiogenesis requires microenvironmental cues that balance cell invasion speed and proliferation; 2) dynamic interactions between sprout stalk cells and ECM regulates neovessel lumenization; and 3) imbuing microporosity within synthetic hydrogels can enhance endothelial cell invasion and angiogenic sprout lumenization.



Lastly, this thesis investigated how fibrous matrix cues activate quiescent vessel-lining endothelial cells into invasive tip cells in the context of fibrosis. Composite hydrogels (electrospun fiber segments suspended within 3D ECM) were integrated with the angiogenesis-on-a-chip platform. These studies establish that heightened matrix fiber density destabilizes cell-cell adherens junctions, reduces endothelium barrier function, and promotes the invasion of endothelial tip cells. Performing transcriptomic and secretomic analyses on fiber-induced tip endothelial cells revealed that fibrous ECM cues promote a fibrosis propagating phenotype.



Overall, the work presented in this dissertation integrates tunable biomaterials with microfabricated devices to investigate cell migration mechanoreciprocity of single mesenchymal cell migration, the collective migration of endothelial cells during angiogenesis, and endothelial-mesenchymal transition of quiescent endothelial cells into a fibrosis propagating cell phenotype.



Date: Friday, June 4, 2021

Time: 12:30 PM

Zoom: https://umich.zoom.us/meeting/register/tJcsf-uhpj4vGtyM7x-td2VV39BzqmF_zoob (Zoom link requires prior registration)

Chair: Dr. Brendon Baker

]]>
Lecture / Discussion Mon, 24 May 2021 14:17:02 -0400 2021-06-04T12:30:00-04:00 2021-06-04T13:30:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
LSA Technology Services Research Support Office Hours (June 7, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270708@events.umich.edu Event Begins: Monday, June 7, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-07T14:00:00-04:00 2021-06-07T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (June 8, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270755@events.umich.edu Event Begins: Tuesday, June 8, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-08T10:00:00-04:00 2021-06-08T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
2021 ROLAND “RED” HISS EVENT, DEPARTMENT OF LEARNING HEALTH SCIENCES (June 8, 2021 2:00pm) https://events.umich.edu/event/82446 82446-21100193@events.umich.edu Event Begins: Tuesday, June 8, 2021 2:00pm
Location: Off Campus Location
Organized By: Department of Learning Health Sciences

All Michigan Medicine faculty and staff are cordially invited to attend the Department of Learning Health Sciences’ Annual Roland “Red” Hiss Virtual Event on June 8, 2021 from 2:00-4:00pm. This event honors the life and work of Dr. Roland “Red” Hiss (1932-2016) and celebrates the accomplishments of Scholars in the Medical Education Scholars Program.

This year, the Hiss Event will take place as an MESP Virtual Research Symposium. Dr. Hiss’ legacy will be celebrated by recognizing the accomplishments of recent participants in the Medical Education Scholars Program.

We will use an online platform to host the event, and an interactive program will be shared with all registered guests in the days leading up to the event. In addition to event information, this program will contain instructions for accessing the virtual platform. To register and receive additional details about the event, please follow this link: REGISTER NOW.

We hope you will join us as we celebrate the past, present, and future of medical education research at the University of Michigan!

]]>
Conference / Symposium Tue, 23 Feb 2021 13:46:10 -0500 2021-06-08T14:00:00-04:00 2021-06-08T16:00:00-04:00 Off Campus Location Department of Learning Health Sciences Conference / Symposium Medical Education Scholars Program
Safety Assessment of Autonomous Vehicles with a Naturalistic and Adversarial Driving Environment (June 9, 2021 1:00pm) https://events.umich.edu/event/84039 84039-21619637@events.umich.edu Event Begins: Wednesday, June 9, 2021 1:00pm
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

Safety performance testing is critical to the development and deployment of autonomous vehicles (AVs). The prevailing approach life-like simulations of our driving environment. However, due to its high dimensionality and the rareness of safety-critical events, hundreds of millions of miles would be required to demonstrate an AV's safety performance.

The research in this presentation proposes a naturalistic and adversarial driving environment that can significantly reduce the required number of miles driven while simultaneously maintaining unbiasedness. Drs. Henry Liu and Shuo Feng will demonstrate the effectiveness of this in a highway-driving simulation.

Learn more about the proposed research: https://myumi.ch/BoQ2Q

---
About the speakers:
Dr. Henry Liu is a professor in the Department of Civil and Environmental Engineering at the University of Michigan, a Research Professor at the University of Michigan Transportation Research Institute (UMTRI), and the Director for the Center for Connected and Automated Transportation (CCAT). Professor Liu conducts interdisciplinary research at the interface of transportation engineering, automotive engineering, and artificial intelligence. Specifically, his scholarly interests concern traffic flow monitoring, modeling, and control, as well as testing and evaluation of connected and automated vehicles (CAVs). He has published more than 120 refereed journal papers on these topics and his work has been widely recognized in the public media for promoting smart transportation innovations. He has appeared on media outlets including CNBC, Forbes, Technode, and more. In 2019, Professor Liu was invited to testify on the nation's transportation research agenda in front of the US House Subcommittee on Research and Technology. Professor Liu has nurtured a new generation of scholars, and some of his Ph.D. students and postdocs have joined first-class universities such as Columbia, Purdue, and RPI. Professor Liu is also the managing editor of the Journal of Intelligent Transportation Systems.

Dr. Shuo Feng is a postdoctoral research fellow in the Department of Civil and Environmental Engineering at the University of Michigan, Ann Arbor. He received his bachelor’s and Ph.D. degrees in the Department of Automation at Tsinghua University, China, in 2014 and 2019, respectively. He was also a visiting scholar at the University of Michigan from 2017 to 2019. His research interests lie in the testing and evaluation of connected and automated vehicles (CAVs), cooperative automation, and traffic environment modeling. Dr. Feng has published around 20 articles in refereed journals including Nature Communications, IEEE Transactions on Intelligent Transportation Systems, IEEE Transactions on Control Systems Technology, and Transportation Research Part C: Emerging Technologies. He has served as a member in the SAE ORAD V&V committee and workshop organizer of the IEEE 2021 Intelligent Vehicles Symposium. He received the “Best Ph.D. Dissertation Award” from the IEEE Intelligent Transportation Systems Society (ITSS) in 2020.

]]>
Livestream / Virtual Thu, 13 May 2021 13:32:49 -0400 2021-06-09T13:00:00-04:00 2021-06-09T14:00:00-04:00 Off Campus Location Center for Connected and Automated Transportation Livestream / Virtual Decorative Image of the CCAT Research Review which features the speaker's headshots
EEB dissertation defense: Bee-plant interactions in coffee agroecosystems: management and matrix effects on mutualistic and antagonistic relationships (June 10, 2021 3:00pm) https://events.umich.edu/event/84037 84037-21619635@events.umich.edu Event Begins: Thursday, June 10, 2021 3:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Gordon defends his doctoral dissertation

Closer to the event, please check your email for the passcode or contact eeb.gradcoord@umich.edu at least two hours prior to the event.

Image: Gordon Fitch

]]>
Livestream / Virtual Thu, 20 May 2021 15:17:39 -0400 2021-06-10T15:00:00-04:00 2021-06-10T16:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual coffee farm in the mountains, white flowers
LSA Technology Services Research Support Office Hours (June 10, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270802@events.umich.edu Event Begins: Thursday, June 10, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-10T15:00:00-04:00 2021-06-10T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (June 14, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270709@events.umich.edu Event Begins: Monday, June 14, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-14T14:00:00-04:00 2021-06-14T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
RNA Innovation Seminar featuring Rising Scholars: Khan & McMillan (June 14, 2021 4:00pm) https://events.umich.edu/event/83934 83934-21619166@events.umich.edu Event Begins: Monday, June 14, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

Registration Required: https://umich.zoom.us/webinar/register/WN_uLz-ONHVQPuRINMYUNvBJQ

“CCR5 as a model to examine reporter assays in evaluating translational phenomena”
Yousuf Khan
Knight-Hennessy Scholar
Stanford University

KEYWORDS: dual luciferase, frameshifting, recoding, CCR5
ABSTRACT: During the decoding of a subset of mRNAs, a proportion of ribosomes productively shift to the −1 reading frame at specific slippage-prone sites in a phenomenon known as programmed −1 ribosomal frameshifting (−1 PRF) to generate a frameshifted, C-terminally unique protein. The first experimentally verified occurrence of functionally utilized non-retroelement derived −1 PRF in humans has been reported in the mRNA encoding the immune-functioning C-C chemokine receptor 5 (CCR5). Here, we show that frameshifting does not occur during CCR5 decoding. Apart from its importance in understanding expression of a gene relevant to cancer, an HIV-1 receptor (and the associated claimed rationale for generating the first humans derived from genetically modified embryos), the findings imply that caution is appropriate in assessing results from translational reporter assays.

~and~

“Intersection between RNA methylation and TDP43-mediated toxicity in ALS”
Michael McMillan
Ph.D. candidate
Cellular and Molecular Biology
University of Michigan

KEYWORDS: TDP43, m6A, ALS, RNA stability
ABSTRACT: Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease resulting in the death of upper and lower motor neurons. ALS has no known cure and limited therapeutic options, and the underlying pathological mechanisms remain unclear. Despite considerable variability in clinical presentation, over 95% of ALS cases exhibit cytoplasmic inclusions of the RNA binding protein TDP43. Emerging evidence suggests that TDP43 is crucial for RNA stability, and that dysregulation of RNA homeostasis may contribute to ALS pathogenesis.
Methylation of RNA at the 6th position nitrogen (N6-methyladenosine methylation, or m6A) by methyltransferases (writers) or removal of methyl groups by demethylases (erasers) has dramatic effects on RNA stability and translation mediated by a family of RNA biding proteins that recognize methylated RNA (readers). m6A writers and erasers specifically localize to nuclear speckles, membraneless nuclear organelles rich in RNA binding proteins and splicing factors, including TDP43. Together with our data showing that TDP43 regulates RNA stability, these observations suggest that TDP43 may destabilize m6A modified RNA. Here, we show that methylated RNA co-purified with TDP43 from cultured cells via RNA immunoprecipitation, and abrogation of methylation sites disrupted TDP43 binding, suggesting that TDP43 recognizes m6A modified RNA in cellulo. We also noted profound and widespread hypermethylation of coding and non-coding transcripts in ALS spinal cord, many overlapping with confirmed TDP43 target transcripts. Consistent with a central role for m6A modification in TDP43-mediated toxicity, we identified several factors operating within the m6A pathway that enhance or suppress the toxicity of TDP43 in rodent primary cortical neurons via a single-cell CRISPR/Cas9 candidate-based screen. Genetic knockout of the established m6A reader YTHDF2 rescued TDP43 toxicity in primary neurons, and YTHDF2 was also upregulated in ALS postmortem sections. Together, these data imply a fundamental link between m6A RNA modifications and ALS pathogenesis, potentially mediated by TDP43-dependent RNA destabilization.

]]>
Lecture / Discussion Tue, 18 May 2021 14:31:45 -0400 2021-06-14T16:00:00-04:00 2021-06-14T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Yousuf Khan (Stanford) & Mike McMillan (U-M)
LSA Technology Services Research Support Office Hours (June 15, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270756@events.umich.edu Event Begins: Tuesday, June 15, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-15T10:00:00-04:00 2021-06-15T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Clinical Simulation Center Brown Bag Discussion (June 15, 2021 12:00pm) https://events.umich.edu/event/84097 84097-21620084@events.umich.edu Event Begins: Tuesday, June 15, 2021 12:00pm
Location: Off Campus Location
Organized By: Department of Learning Health Sciences

"Omni II Infant, Safe Patient Handling Obesity suit, UH Training Room and Juno-Med fidelity manikin"

Our team is planning four short lightning talks, highlighting some new equipment and additions to our courses.

This will be a Zoom meeting.
https://umich.zoom.us/j/97929340876

Dial by your location
+1 646 876 9923
Meeting ID: 979 2934 0876

Find your local number: https://umich.zoom.us/u/ac04eNX6TC

]]>
Lecture / Discussion Tue, 25 May 2021 15:21:30 -0400 2021-06-15T12:00:00-04:00 2021-06-15T13:00:00-04:00 Off Campus Location Department of Learning Health Sciences Lecture / Discussion Mod CCO, DLHS Clinical Simulation Center
Virtual Family Art Studio: Kusudama (June 17, 2021 11:00am) https://events.umich.edu/event/84061 84061-21619782@events.umich.edu Event Begins: Thursday, June 17, 2021 11:00am
Location: Museum of Art
Organized By: University of Michigan Museum of Art (UMMA)

Click here to register: http://events.constantcontact.com/register/event?llr=uhlrs88ab&oeidk=a07ehzg2zu940354d93.

In this special program for Ann Arbor Japan Week, join College of Literature, Science, and the Arts alum Maiya Yu for a tutorial on making Japanese kusudama — paper models typically created by sewing or gluing together multiple identical origami units. While you learn about the kusudama process with Maiya, you will also have the opportunity to explore some of the artwork in UMMA's collection with Student Programs Assistant Emily Considine. This event is open for all ages, though each project will increase in difficulty. Projects later in the program may require a level of dexterity difficult for small children to achieve on their own.

Materials We highly encourage you to have your paper prepared ahead of time. 

You will need:
2 sets of 6 squares of paper (recommend 6 inch squares) (12 squares total) 1 set of 12 squares of paper (recommend 4 inch squares) (60 squares total) 12 sets of 6 squares of paper (recommend 3 inch squares) (72 squares total) A glue stick or other relatively fast drying glue or glue dots (or make your own glue at home)
You can cut your own paper following these tips or you can buy pre-cut paper. This multi-pack has enough paper for at least 8 participants in all of the recommended sizes.

Recommended paper types:
Printer paper Magazine paper Origami paper Notebook paper
We do not recommend:
Cardstock Construction paper Cardboard

Family Art Studio is generously supported by the University of Michigan Credit Union Arts Adventures Program, UMMA's Lead Sponsor for Student and Family Engagement.  

Ann Arbor Japan Week is organized by the U-M Center for Japanese Studies. For information about the full line up of activities, please visit the CJS website.

]]>
Workshop / Seminar Thu, 17 Jun 2021 12:15:18 -0400 2021-06-17T11:00:00-04:00 2021-06-17T13:00:00-04:00 Museum of Art University of Michigan Museum of Art (UMMA) Workshop / Seminar Museum of Art
Genetic variation, ER stress, Disease modifiers (June 17, 2021 12:00pm) https://events.umich.edu/event/84244 84244-21620803@events.umich.edu Event Begins: Thursday, June 17, 2021 12:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Host: Baharr Chawla

]]>
Workshop / Seminar Tue, 08 Jun 2021 16:49:56 -0400 2021-06-17T12:00:00-04:00 2021-06-17T13:30:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Yellow-MCDB-initials-Microscope-on-blue
LSA Technology Services Research Support Office Hours (June 17, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270803@events.umich.edu Event Begins: Thursday, June 17, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-17T15:00:00-04:00 2021-06-17T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
2021 International Symposium on Transportation Data and Modeling (June 21, 2021 8:45am) https://events.umich.edu/event/83965 83965-21619227@events.umich.edu Event Begins: Monday, June 21, 2021 8:45am
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

ISTDM 2021 aims to gather transportation researchers and practitioners across the globe for exploring the frontiers of big data, modeling, and simulation to advance transportation research to support the connected, cooperative, and automated mobility. With a greater focus on emerging technologies, ISTDM 2021 rebrands the two long-standing transportation symposia: International Symposium of Transport Simulation (ISTS), and the International Workshop on Traffic Data Collection and its Standardization (IWTDCS).

The conference program can be found at https://limos.engin.umich.edu/istdm2021/schedule/.

]]>
Conference / Symposium Tue, 04 May 2021 10:27:16 -0400 2021-06-21T08:45:00-04:00 2021-06-21T12:20:00-04:00 Off Campus Location Center for Connected and Automated Transportation Conference / Symposium Banner Image for ISTDM 2021. It features headshots of the keynote speakers
LSA Technology Services Research Support Office Hours (June 21, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270710@events.umich.edu Event Begins: Monday, June 21, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-21T14:00:00-04:00 2021-06-21T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
2021 International Symposium on Transportation Data and Modeling (June 22, 2021 8:45am) https://events.umich.edu/event/83965 83965-21619228@events.umich.edu Event Begins: Tuesday, June 22, 2021 8:45am
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

ISTDM 2021 aims to gather transportation researchers and practitioners across the globe for exploring the frontiers of big data, modeling, and simulation to advance transportation research to support the connected, cooperative, and automated mobility. With a greater focus on emerging technologies, ISTDM 2021 rebrands the two long-standing transportation symposia: International Symposium of Transport Simulation (ISTS), and the International Workshop on Traffic Data Collection and its Standardization (IWTDCS).

The conference program can be found at https://limos.engin.umich.edu/istdm2021/schedule/.

]]>
Conference / Symposium Tue, 04 May 2021 10:27:16 -0400 2021-06-22T08:45:00-04:00 2021-06-22T12:20:00-04:00 Off Campus Location Center for Connected and Automated Transportation Conference / Symposium Banner Image for ISTDM 2021. It features headshots of the keynote speakers
LSA Technology Services Research Support Office Hours (June 22, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270757@events.umich.edu Event Begins: Tuesday, June 22, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-22T10:00:00-04:00 2021-06-22T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
UM Single Cell Spatial Analysis Program (SCSAP) Kickoff Symposium (June 22, 2021 1:00pm) https://events.umich.edu/event/84222 84222-21620781@events.umich.edu Event Begins: Tuesday, June 22, 2021 1:00pm
Location: Off Campus Location
Organized By: Single Cell Spatial Analysis Program (SCSAP)

The UM BSI SINGLE CELL SPATIAL ANALYSIS PROGRAM KICK OFF SYMPOSIUM

Featuring Keynote Speaker Tzumin Lee, M.D. PhD.
Presenting: Linking single-cell genomics with single-cell genetics.

Date: June 22nd
Time: 1:00 pm -4:30 PM EST
Location: Zoom Webinar
Register at: https://umich.zoom.us/webinar/register/WN_Zax2iT5TReGILR_sQmIZ3w

Additional Mini-talks on: Spatial Transcriptomics, Single Cell RNA-Seq, CyTOF, Multispectral Imaging, Seq-SCOPE, Rare Cell Isolation.

Speakers:
Roger Cone, Ph.D. Evan Keller, Ph.D.
Thomas Wilson, M.D., Ph.D. Jun Li, Ph.D.
Tim Frankel, M.D. Sue Hammoud, Ph.D.
Jun Hee Lee, Ph.D. Olivia Koues, Ph.D.
Sunitha Nagrath, Ph.D. Justin Colacino, Ph.D.
Arvind Rao, Ph.D. Max S. Wicha, M.D.
Patricia Schnepp, Ph.D.

Find us at https://singlecellspatialanalysis.umich.edu
Questions/Comments please contact us at singlecellspatialanalysis@umich.edu

]]>
Workshop / Seminar Fri, 04 Jun 2021 13:26:44 -0400 2021-06-22T13:00:00-04:00 2021-06-22T16:30:00-04:00 Off Campus Location Single Cell Spatial Analysis Program (SCSAP) Workshop / Seminar Dr. Tzumin Lee
2021 International Symposium on Transportation Data and Modeling (June 23, 2021 8:45am) https://events.umich.edu/event/83965 83965-21619229@events.umich.edu Event Begins: Wednesday, June 23, 2021 8:45am
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

ISTDM 2021 aims to gather transportation researchers and practitioners across the globe for exploring the frontiers of big data, modeling, and simulation to advance transportation research to support the connected, cooperative, and automated mobility. With a greater focus on emerging technologies, ISTDM 2021 rebrands the two long-standing transportation symposia: International Symposium of Transport Simulation (ISTS), and the International Workshop on Traffic Data Collection and its Standardization (IWTDCS).

The conference program can be found at https://limos.engin.umich.edu/istdm2021/schedule/.

]]>
Conference / Symposium Tue, 04 May 2021 10:27:16 -0400 2021-06-23T08:45:00-04:00 2021-06-23T12:20:00-04:00 Off Campus Location Center for Connected and Automated Transportation Conference / Symposium Banner Image for ISTDM 2021. It features headshots of the keynote speakers
PhD Defense: Jiayue Cao (June 23, 2021 3:00pm) https://events.umich.edu/event/84287 84287-21621035@events.umich.edu Event Begins: Wednesday, June 23, 2021 3:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

The stomach and brain interact closely with each other. Their interactions are central to digestive functions and the “gut feeling”. The neural pathways that mediate the stomach-brain interactions include the vagus nerve and the thoracic nerve. Through these nerves, the stomach can relay neural signals to a number of brain regions that span a central gastric network. This gastric network allows the brain to monitor and regulate gastric physiology and allows the stomach to influence emotion and cognition. Impairment of this gastric network may lead to both gastric and neurological disorders, e.g., anxiety, gastroparesis, functional dyspepsia, and obesity. However, the structural constituents and functional roles of the central gastric network remain unclear. In my dissertation research, I leveraged complementary techniques to characterize the central gastric network in rats across a wide range of scales and different gastric states. In animal experiments, I used functional magnetic resonance imaging (fMRI) to map brain activity synchronized with gastric electrical activity and to map brain activations induced by electrical stimulation applied to the cervical vagus or its afferent terminals on the stomach. I also used neurophysiology to characterize gastric neurons in brainstem in response to gastric electrical stimulation. Results from my studies suggest that 1) gastric neurons in the brainstem are selective to the orientation of muscle activity relayed through intramuscular arrays, 2) the central gastric network is intrinsically coupled to gastric slow waves and their amplitude fluctuations primarily via vagal signaling, 3) selective stimulation of the vagus can evoke widespread and fast brain responses and alter functional connectivity within and beyond the central gastric network. My dissertation research contributes to the foundation of mapping and characterizing the central and peripheral mechanisms of gastric interoception and sheds new light on where and how to stimulate the peripheral nerves to modulate stomach-brain interactions.



Date: Wednesday, June 23, 2021

Time: 3:00 PM

Zoom: https://umich.zoom.us/j/2757414653

Chair: Dr. Zhongming Liu

]]>
Lecture / Discussion Tue, 15 Jun 2021 23:04:33 -0400 2021-06-23T15:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
2021 International Symposium on Transportation Data and Modeling (June 24, 2021 8:45am) https://events.umich.edu/event/83965 83965-21619230@events.umich.edu Event Begins: Thursday, June 24, 2021 8:45am
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

ISTDM 2021 aims to gather transportation researchers and practitioners across the globe for exploring the frontiers of big data, modeling, and simulation to advance transportation research to support the connected, cooperative, and automated mobility. With a greater focus on emerging technologies, ISTDM 2021 rebrands the two long-standing transportation symposia: International Symposium of Transport Simulation (ISTS), and the International Workshop on Traffic Data Collection and its Standardization (IWTDCS).

The conference program can be found at https://limos.engin.umich.edu/istdm2021/schedule/.

]]>
Conference / Symposium Tue, 04 May 2021 10:27:16 -0400 2021-06-24T08:45:00-04:00 2021-06-24T12:20:00-04:00 Off Campus Location Center for Connected and Automated Transportation Conference / Symposium Banner Image for ISTDM 2021. It features headshots of the keynote speakers
PhD Defense: Eric Charles Hobson (June 24, 2021 10:30am) https://events.umich.edu/event/84237 84237-21620794@events.umich.edu Event Begins: Thursday, June 24, 2021 10:30am
Location: Off Campus Location
Organized By: Biomedical Engineering

Mechanical testing of viscoelastic biomaterials is of critical importance in biomedical engineering, enabling basic research into the role of the extracellular matrix, investigatory and diagnostic testing of tissues and biofluids, and the development and characterization of tissue engineered therapeutics. Conventional material testing approaches used for soft biomaterials generally require force application through direct contact with a sample, leading to potential contamination and damage, and thereby limiting these approaches to end-point measurements. To overcome these limitations, we have developed a new measurement technique, Resonant Acoustic Rheometry (RAR), which enables high-throughput, quantitative, and non-contact viscoelastic characterization of biomaterials, soft tissues, and biological fluids.



RAR uses ultrasonic pulses to both generate microscale perturbations and measure the resulting resonant oscillations at the surface of soft materials using standard labware. Resonant oscillatory properties obtained from the frequency spectra of the surface oscillations, including the resonant frequency and the damping coefficient, are used to quantify material properties such as shear modulus, shear viscosity, and surface tension in both viscoelastic solids and liquids.



We developed a prototype RAR system and tested it on a range of soft biomaterials, with shear moduli ranging from under 100 Pa to over 50 kPa, including fibrin, gelatin, and polyethylene glycol (PEG). Shear moduli measured using RAR were validated both computationally using finite element analysis and experimentally using conventional shear rheometry, with excellent linear correlation in measured elasticity between techniques (R2 > 0.95). By performing parallel RAR experiments using microwells of different sizes, we verified that resonant oscillatory behaviors could be used to quantify the intrinsic viscoelastic properties of a material. We also demonstrated the rapid, non-contact monitoring of changes in material properties over a variety of temporal scales, ranging from processes occurring on the order of milliseconds to those occurring over hours and days. High temporal resolution RAR measurements, with sampling intervals as low as 0.2 seconds, were used to characterize the gelation process. Characteristic features of the resonant surface waves during phase transition were applied to identify the gel point for various hydrogels. High sample throughput was demonstrated by performing longitudinal RAR testing to explore the impact of hydrogel polymer and crosslinker concentration on both reaction kinetics and final mechanical properties in full factorial experiments consisting of over 15,000 unique measurements. We were able to identify individual effects of design parameters as well as interactions that led to unexpected mechanical properties, demonstrating the importance of combinatorial methods and high-throughput mechanical characterization in material design.



These studies demonstrate that RAR can rapidly and accurately assess the mechanical properties of soft viscoelastic biomaterials. The measurements generated are analogous to those produced using conventional mechanical testing, and RAR is further capable of longitudinal viscoelastic studies over time. RAR applies automation in both data collection and analysis, allowing high throughput measurement of an array of samples without contact or the need for manual intervention. Furthermore, RAR uses standard microwell plates, which simplifies sample preparation and handling. The viscoelastic properties of soft biomaterials are relevant in a wide range of applications, including for clinical diagnostic assays and the development of hydrogel materials for regenerative medicine. RAR represents a fast, accurate, and cost-effective method for materials characterization in these applications.



June 24 - 10:30 AM

Zoom: https://umich.zoom.us/meeting/register/tJcsd-iurTosGdNn_gR-FbOCe5TUR09Y58WV

Co-Chairs: Dr. Cheri Deng and Dr. Jan Stegmann

]]>
Lecture / Discussion Tue, 22 Jun 2021 16:37:33 -0400 2021-06-24T10:30:00-04:00 2021-06-24T11:30:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
LHS Collaboratory-Summer Workshop (June 24, 2021 1:00pm) https://events.umich.edu/event/83809 83809-21538171@events.umich.edu Event Begins: Thursday, June 24, 2021 1:00pm
Location: Off Campus Location
Organized By: Department of Learning Health Sciences

This virtual workshop will review the basic concepts behind Learning Health Systems including the learning cycle, infrastructure, and learning communities.  Participants will engage in a collaborative activity to design a learning cycle.

Registration for this virtual event is limited-
please register early!

Charles P. Friedman

Department Chair of Learning Health Sciences
Josiah Macy Jr. Professor of Medical Education
Professor of Information
Professor of Public Health
University of Michigan

]]>
Workshop / Seminar Tue, 20 Apr 2021 10:17:48 -0400 2021-06-24T13:00:00-04:00 2021-06-24T16:00:00-04:00 Off Campus Location Department of Learning Health Sciences Workshop / Seminar LHS Collaboratory logo
LSA Technology Services Research Support Office Hours (June 24, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270804@events.umich.edu Event Begins: Thursday, June 24, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-24T15:00:00-04:00 2021-06-24T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Planning an NSF STC Proposal (June 25, 2021 12:00pm) https://events.umich.edu/event/84258 84258-21620822@events.umich.edu Event Begins: Friday, June 25, 2021 12:00pm
Location: Off Campus Location
Organized By: OVPR Office of Research Development

U-M Research Development will present an overview of the NSF Science and Technology Centers; an RFP is expected in coming months.

During this discussion, speakers will provide an overview of STCs and award history; insight into federal funding priorities and emerging research areas, and how investigators can work with schools/colleges and OVPR to develop competitive proposals.

Speakers include Nick Wigginton, Asst. Vice President for Research; Brad Orr, Associate Vice President for Research; Neil Canfield, Director of Federal Relations; and Research Associate Deans Eric Michielssen (College of Engineering) and Chris Poulsen (LSA-Natural Sciences).

Zoom invites will be sent via email after you register.

]]>
Livestream / Virtual Thu, 10 Jun 2021 16:46:40 -0400 2021-06-25T12:00:00-04:00 2021-06-25T13:00:00-04:00 Off Campus Location OVPR Office of Research Development Livestream / Virtual RD
BME Master's Defense: Spencer Morris (June 28, 2021 10:00am) https://events.umich.edu/event/84342 84342-21623372@events.umich.edu Event Begins: Monday, June 28, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Acquiring accurate measurements for blood flow is a clinically relevant problem of interest. Three-dimensional color flow with partial volume correction (PVC) is a relatively new method for measuring blood flow that accounts for beams located partially outside of the blood vessel. Recent work has shown that the relationship between color flow power and partially perfused voxels is nonlinear. This work investigates the statistics of color power measurements in simulated plug flow to help explain this nonlinear behavior. Data was acquired using Field II simulations in which a 3.75 MHz mechanically swept linear array obtained RF data of blood moving through a vessel. Blood in the vessel exhibited plug flow, and tissue backscatter was set to 40 dB below blood. The statistics of color power at each point in the processing chain were analyzed using histograms, established results in ultrasound statistics, and derived probability density functions (pdfs). For locations completely inside the beam, power before additional processing showed exponential behavior, whereas the square root of power, i.e., amplitude, was Rician distributed. After implementing the Kasai algorithm, the power values could be estimated with a gamma distribution with a shape parameter of 2.21. Kasai powers corresponding to tissue could also be fitted with a gamma distribution, albeit with a shape parameter close to 1, indicating close to exponential behavior. Kasai powers for partial volume data were intermediate between the tissue and blood data. A method for estimating partial volume weight from the skewness and kurtosis of samples taken from the same location is also discussed.

Date: Monday, June 28, 2021
Time: 10:00 AM
Zoom: https://umich.zoom.us/j/97162930417
Chair: Dr. Oliver Kripfgans

]]>
Presentation Tue, 22 Jun 2021 11:48:21 -0400 2021-06-28T10:00:00-04:00 2021-06-28T11:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
LSA Technology Services Research Support Office Hours (June 28, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270711@events.umich.edu Event Begins: Monday, June 28, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-28T14:00:00-04:00 2021-06-28T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (June 29, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270758@events.umich.edu Event Begins: Tuesday, June 29, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-06-29T10:00:00-04:00 2021-06-29T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Interrogating organ-specific niche factors in the developing human intestine to inform organ engineering (June 30, 2021 1:00pm) https://events.umich.edu/event/83889 83889-21593465@events.umich.edu Event Begins: Wednesday, June 30, 2021 1:00pm
Location: Off Campus Location
Organized By: Cell & Developmental Biology

We are pleased to announce that Emily Hollloway will present her dissertation defense on June 30, 2021, at 1:00 pm via a live stream virtual seminar!

Dissertation Committee:
Associate Professor Jason Spence, Mentor
Associate Professor Benjamin Allen, Chair
Professor Andrew Putnam
Assistant Professor Daniel Lucas
Professor Yukiko Yamashita

]]>
Livestream / Virtual Tue, 27 Apr 2021 11:32:38 -0400 2021-06-30T13:00:00-04:00 2021-06-30T14:00:00-04:00 Off Campus Location Cell & Developmental Biology Livestream / Virtual Interrogating organ-specific niche factors in the developing human intestine to inform organ engineering
RNA Collaborative Seminar (June 30, 2021 4:00pm) https://events.umich.edu/event/84166 84166-21620522@events.umich.edu Event Begins: Wednesday, June 30, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

REGISTRATION REQUIRED: https://umich.zoom.us/webinar/register/WN_6OEQ6sDAQ0-21GHm6d7VEQ

“Dynamic multivalent interactions drive mammalian RNA regulation”
Sethu Pitchiaya, Ph.D.
Dept of Urology

and

"Characterizing cellular RNA-protein interaction networks with chemical probes"
Chase Weidmann, Ph.D.
Dept of Biological Chemistry

]]>
Lecture / Discussion Wed, 09 Jun 2021 15:28:29 -0400 2021-06-30T16:00:00-04:00 2021-06-30T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Sethu Pitchiaya & Chase Weidmann
LSA Technology Services Research Support Office Hours (July 1, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270805@events.umich.edu Event Begins: Thursday, July 1, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-01T15:00:00-04:00 2021-07-01T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
EEB student evaluation seminar: To the plastisphere and beyond: exploring the microbial ecotoxicology of plastics in aquatic environments (July 2, 2021 11:00am) https://events.umich.edu/event/84336 84336-21623367@events.umich.edu Event Begins: Friday, July 2, 2021 11:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Rachel presents her preliminary seminar.

Closer to the event, please see your email or contact eeb.gradcoord@umich.edu for the passcode at least two hours prior to the seminar.

Image: Scott Higgins

]]>
Livestream / Virtual Tue, 22 Jun 2021 10:31:45 -0400 2021-07-02T11:00:00-04:00 2021-07-02T12:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual an overhead drone picture of collaborators dosing a mesocosm with colored microplastics, photo credit Scott Higgins
LSA Technology Services Research Support Office Hours (July 5, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270712@events.umich.edu Event Begins: Monday, July 5, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-05T14:00:00-04:00 2021-07-05T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (July 6, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270759@events.umich.edu Event Begins: Tuesday, July 6, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-06T10:00:00-04:00 2021-07-06T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
EEB thesis defense: Variation in body size of bushy-tailed woodrats (Neotoma cinerea) along environmental gradients in Colorado (July 6, 2021 1:00pm) https://events.umich.edu/event/84162 84162-21620506@events.umich.edu Event Begins: Tuesday, July 6, 2021 1:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Aurelia defends her thesis

Please contact eeb.gradcoord@umich.edu for the passcode at least two hours prior to the event

Image credit: iNaturalist https://www.inaturalist.org/guide_taxa/627696

]]>
Livestream / Virtual Wed, 23 Jun 2021 13:54:26 -0400 2021-07-06T13:00:00-04:00 2021-07-06T14:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Bushy-tailed woodrat (Neotoma cinerea)
LSA Technology Services Research Support Office Hours (July 8, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270806@events.umich.edu Event Begins: Thursday, July 8, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-08T15:00:00-04:00 2021-07-08T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
PhD Defense: Hans Zander (July 9, 2021 9:00am) https://events.umich.edu/event/84346 84346-21623406@events.umich.edu Event Begins: Friday, July 9, 2021 9:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Spinal cord stimulation (SCS) is a neuromodulation technique that applies electrical stimulation to the spinal cord to alter neural activity or processing. While SCS has historically been used as a last resort therapy for chronic pain management, novel applications and technologies have recently been developed that either increase the efficacy of treatment for chronic pain or drive neural activity to produce muscular activity/movement following a paralyzing spinal cord injury (SCI). Despite these recent innovations, there remain fundamental questions concerning the neural recruitment underlying these efficacious results. This work evaluated the neural activity and mechanisms for two novel SCS applications: closed-loop spinal cord stimulation for pain management, and ventral, high frequency spinal cord stimulation (HF-SCS) for inspiratory muscle activation following a SCI.

To evaluate neural activity, I developed computational models of SCS. Models consisted of 3 components: a finite element model (FEM) of the spinal cord to predict voltages during stimulation, biophysical neuron models, and algorithms to apply time-dependent extracellular voltages to the neuron models and simulate their response. While this cutting-edge modeling methodology could be used to predict neural activity following stimulation, it was unclear how common anatomical or technical model simplifications affected neural predictions. Therefore, the initial goal of this work was to evaluate how modeling assumptions influence neural behavior.

My initial work identified how several relevant anatomical and technical factors influence model predictions of neural activity. To evaluate these factors, I designed an FEM of a T9 thoracic spine with an implanted electrode. Then, I sequentially removed details from the model and quantified the changes in neural predictions. I identified several factors with profound (>30%) impacts on neural thresholds, including overall model impedance (for voltage-controlled stimulation), the presence of a detailed vertebral column, and dura mater conductivity. I also identified several factors that could safely be ignored in future models. This work will be invaluable as a guide for future model development.

Next, I developed a canine model to evaluate T2 ventral HF-SCS for inspiratory muscle activation. I designed and positioned two neuron models hypothesized to lead to inspiratory behavior: ventrolateral funiculus fibers (VLF) leading to diaphragm activation and inspiratory intercostal motoneurons. With this model, I predicted robust VLF and T2-T5 motoneuron recruitment within the physiologic range of stimulation. Additionally, I designed two stimulation leads that maximize inspiratory neuron recruitment. The finalized leads were evaluated via in vivo experiments, which found excellent agreement with the model. This work builds our mechanistic understanding of this novel therapy, improves its implementation, and aids in future translational efforts towards human subjects.

Finally, I developed a computational model to evaluate closed-loop stimulation for chronic pain. This work characterized the neural origins of the evoked compound action potential (ECAP), the controlling biomarker of closed-loop stimulation. I modified my modeling methodology to predict ECAPs generated during low thoracic dorsal stimulation in humans, which matched with experimental measurements. This modeling work showed that ECAP properties depend on activation of a narrow range of neuron diameters and quantified how anatomical and stimulation factors (CSF thickness, stimulation configuration, lead position, pulse width) influence ECAP morphology, timing, and neural recruitment. These results improve our mechanistic understanding of closed-loop stimulation and may lead to expanded clinical utility as well as better validation of future SCS computational models.

Date: Friday, July 9, 2021

Time: 9:00 AM EDT

Zoom: https://umich.zoom.us/j/96847307388

Chair: Dr. Scott Lempka

]]>
Lecture / Discussion Tue, 22 Jun 2021 16:45:26 -0400 2021-07-09T09:00:00-04:00 2021-07-09T10:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Logo
EEB dissertation defense: Genomic studies of gene expression errors and their evolutionary ramifications (July 9, 2021 10:00am) https://events.umich.edu/event/84319 84319-21623290@events.umich.edu Event Begins: Friday, July 9, 2021 10:00am
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Mengyi defends his dissertation

Please check your email closer to the event for the passcode or contact eeb.gradcoord@umich.edu at least two hours prior to the start time.

]]>
Livestream / Virtual Tue, 29 Jun 2021 12:16:07 -0400 2021-07-09T10:00:00-04:00 2021-07-09T11:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Words written on a blackboard, "RULE #1 DO NO HARM"
LSA Technology Services Research Support Office Hours (July 12, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270713@events.umich.edu Event Begins: Monday, July 12, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-12T14:00:00-04:00 2021-07-12T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (July 13, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270760@events.umich.edu Event Begins: Tuesday, July 13, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-13T10:00:00-04:00 2021-07-13T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Homologous chromosome pairing in meiosis (July 14, 2021 2:00pm) https://events.umich.edu/event/84408 84408-21623879@events.umich.edu Event Begins: Wednesday, July 14, 2021 2:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Abstract: Sexual reproduction in eukaryotes relies on meiosis, a specialized form of cell division that enables genetic diversity via recombination and segregation of alleles. The basic program is conserved from yeasts to mammals. A central question is how each chromosome identifies its homolog among numerous potential partners. The overarching goal of our research is to understand how the nuclear organization and motion of chromosomes contributes to the correct pairing, synapsis, and recombination of homologs during meiosis I prophase – and how infidelity in these processes leads to chromosomal abnormalities that underlie infertility, birth defects, or pregnancy loss in humans. We use budding yeast and zebrafish as models to understand how these interrelated processes have evolved.

Host: Cassie Zuckerman

]]>
Workshop / Seminar Wed, 07 Jul 2021 17:42:51 -0400 2021-07-14T14:00:00-04:00 2021-07-14T15:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar portrait of Dr. Sean Burgess
New Urban Mobility: Transformations and & Value Creation (July 15, 2021 1:00pm) https://events.umich.edu/event/84276 84276-21621021@events.umich.edu Event Begins: Thursday, July 15, 2021 1:00pm
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

Currently, urban mobility is facing several challenges: some are the result of long-term urbanization trends and others are the outcome of more recent changes to population behaviors. Addressing these challenges requires systems thinking and a broadening of collaboration between automakers, mobility services companies, and cities. These constituencies must transform, which will determine their new roles in the new, urban mobility. New value chains will emerge along with novel forms of value that will be realized through innovative business models. This presentation, brought to us by Evangelos Simoudis, Ph.D., will highlight the decisions automakers, mobility service companies, and cities must make, and the transformations they will undergo with regards to technology and business models. Dr. Simoudis will also discuss the risks arising from the use of data and artificial intelligence in new, urban mobility.

]]>
Livestream / Virtual Mon, 14 Jun 2021 09:14:48 -0400 2021-07-15T13:00:00-04:00 2021-07-15T14:00:00-04:00 Off Campus Location Center for Connected and Automated Transportation Livestream / Virtual Decorative Image for CCAT Distinguished Lecture Series with Evangelos Simoudis
LSA Technology Services Research Support Office Hours (July 15, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270807@events.umich.edu Event Begins: Thursday, July 15, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-15T15:00:00-04:00 2021-07-15T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
MCDB PhD Defense: Control of Chromatin by RNA-Mediated Transcriptional Silencing (July 19, 2021 1:00pm) https://events.umich.edu/event/84412 84412-21623898@events.umich.edu Event Begins: Monday, July 19, 2021 1:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Mentor: Prof. Andrzej Wierzbicki

]]>
Workshop / Seminar Thu, 08 Jul 2021 13:40:52 -0400 2021-07-19T13:00:00-04:00 2021-07-19T14:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Yellow MCDB initials with drawing of a microscope on blue background
LSA Technology Services Research Support Office Hours (July 19, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270714@events.umich.edu Event Begins: Monday, July 19, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-19T14:00:00-04:00 2021-07-19T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (July 20, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270761@events.umich.edu Event Begins: Tuesday, July 20, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-20T10:00:00-04:00 2021-07-20T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (July 22, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270808@events.umich.edu Event Begins: Thursday, July 22, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-22T15:00:00-04:00 2021-07-22T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Virtual Family Art Studio: Blind Contour: From the Studio to Cafe Sketches (July 24, 2021 11:00am) https://events.umich.edu/event/84392 84392-21623782@events.umich.edu Event Begins: Saturday, July 24, 2021 11:00am
Location: Museum of Art
Organized By: University of Michigan Museum of Art (UMMA)

Click here to register: http://events.constantcontact.com/register/event?llr=uhlrs88ab&oeidk=a07ei7q0ilw8ef8ed5b.

At its core, drawing is hand-eye coordination. From Pablo Picasso to Georgia O'Keeffe, artists of all stripes practice quick figure drawings to warm up and keep their eyes sharp. Blind-contour, continuous line figure drawing is a warm-up technique that, once learned, is a versatile addition to any artist's repertoire. Blind-contour, figure drawing stresses paying close attention to one's surroundings while also remaining free and loose. Get a beginner's introduction to figure drawing with Literature, Science, and the Arts junior Elizabeth Yoon.

Materials:
4-6 sheets of 24" x 48" paper (or newspaper or 4 pieces of printer paper taped together) Regular Markers or Sharpies (or if using newspaper, metallic markers) A large sketching board, easel, flat table, or other flat surface

Family Art Studio is generously supported by the University of Michigan Credit Union Arts Adventures Program, UMMA's Lead Sponsor for Student and Family Engagement. 

]]>
Other Sat, 24 Jul 2021 12:15:23 -0400 2021-07-24T11:00:00-04:00 2021-07-24T13:00:00-04:00 Museum of Art University of Michigan Museum of Art (UMMA) Other Museum of Art
LSA Technology Services Research Support Office Hours (July 26, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270715@events.umich.edu Event Begins: Monday, July 26, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-26T14:00:00-04:00 2021-07-26T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (July 27, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270762@events.umich.edu Event Begins: Tuesday, July 27, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-27T10:00:00-04:00 2021-07-27T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Dimensions of Public Attitudes Toward the Affordable Care Act, 2010 through 2017 (July 27, 2021 7:30pm) https://events.umich.edu/event/84752 84752-21624872@events.umich.edu Event Begins: Tuesday, July 27, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Mon, 26 Jul 2021 15:12:05 -0400 2021-07-27T19:30:00-04:00 2021-07-27T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Summer Program Blalock Lecture series
Analyzing Open-Ended Responses for Understanding Opinions About Presidential Candidates (July 28, 2021 7:30pm) https://events.umich.edu/event/84698 84698-21624453@events.umich.edu Event Begins: Wednesday, July 28, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 12:28:58 -0400 2021-07-28T19:30:00-04:00 2021-07-28T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Blalock Lecture series 2021
LSA Technology Services Research Support Office Hours (July 29, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270809@events.umich.edu Event Begins: Thursday, July 29, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-07-29T15:00:00-04:00 2021-07-29T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Understanding Network Structures (July 29, 2021 7:30pm) https://events.umich.edu/event/84697 84697-21624452@events.umich.edu Event Begins: Thursday, July 29, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 12:25:28 -0400 2021-07-29T19:30:00-04:00 2021-07-29T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Blalock Lecture Series 2021
Karle Symposium (July 30, 2021 9:00am) https://events.umich.edu/event/84409 84409-21623884@events.umich.edu Event Begins: Friday, July 30, 2021 9:00am
Location: Off Campus Location
Organized By: Department of Chemistry

Annual overview of research in the Department of Chemistry, organized and presented by graduate students

Register on the Karle Symposium website
--------
Keynote Speaker:
Prof. Stuart Conway, University of Oxford
"Chemical Epigenetics: Chemical Approaches to Understanding the Function of Epigenetic Machinery in Disease"

Plenary Speaker:
Mehran Arbab, PhD., PPG Industries, Inc.
"Materials Science for Sustainability"

]]>
Conference / Symposium Wed, 07 Jul 2021 23:34:18 -0400 2021-07-30T09:00:00-04:00 2021-07-30T17:15:00-04:00 Off Campus Location Department of Chemistry Conference / Symposium Karle Symposium Poster with 2021 logo
BME Ph.D. Defense: Alyse Krausz (July 30, 2021 10:00am) https://events.umich.edu/event/84644 84644-21624348@events.umich.edu Event Begins: Friday, July 30, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Diagnostic and monitoring devices based on protein biomarker measurements have the potential to inform courses of treatment in acute conditions and to help manage and prevent disease progression in chronic conditions. The importance of diagnostic and monitoring devices cannot be overstated as medicine is blind without them. However, prevalent conditions such as traumatic brain injury (TBI) and chronic kidney disease (CKD) lack adequate diagnostic and monitoring tools. 
 
Assessment of TBI is typically done through neurological examination and neuroimaging techniques. While these methods can identify direct tissue damage to the brain, they cannot assess the secondary damage stemming from the initial injury. The primary tissue damage sets off a cascade of secondary injuries, such as neuronal cell death, blood brain barrier breakdown, edema, and upregulation of inflammatory markers. Protein biomarkers have been proposed as a way of monitoring the progression of secondary TBI injury and of providing more sensitive diagnostic measures when used in conjunction with imaging and physical examination. However, FDA authorized biomarkers, glial fibrillary acidic protein (GFAP) and ubiquitin c-terminal hydrolase L1 (UCH-L1), can currently only be measured in a hospital laboratory. Analyzing TBI biomarker data in field and pre-hospital settings would enable rapid diagnosis and delivery of care, so we developed a glass and silicon microfluidic device for quantification of TBI protein biomarkers via bead-based immunoassay. The device consists of a single channel with a variable height profile fabricated by slowly lowering a glass wafer into hydrofluoric acid. The device can capture and separate beads with diameters ranging from 1 to 5 micrometers. We also developed bead-based quantum dot-linked immunosorbent assays (QLISAs) for GFAP, interleukin-6 (IL-6), and interleukin-8 (IL-8) by conjugating appropriate antibodies to 2.8, 4.5, and 1 micrometer diameter beads, respectively. We used the variable height device to passively separate a mixture of assay beads with completed immunocomplexes into distinct bands where the diameter of the beads matched the height of the channel. The fluorescent intensity of each band was used to quantify a different biomarker concentration, resulting in a customizable brain injury barcode. By changing out the bead size and antibodies used for each immunoassay, the variable height device can keep pace with the developing field of TBI biomarker discovery and validation or be applied to biomarkers for another condition of interest. 
 
We also developed an assay system to monitor CKD, which is one of the ten most common chronic conditions in adults aged 65 and older. Clinical guidelines currently recommend that the urinary albumin-to-creatinine ratio (ACR) be measured once a year to monitor disease progression. However, measuring the ACR at home can enable patients to self-identify the early signs of disease progression and consult their physicians, potentially leading to improved outcomes. We designed and analytically validated inexpensive, colorimetric assays for urinary albumin and creatinine intended to be used in a 3D-printed, disposable microfluidic device. Discrepancies between the results from the colorimetric albumin assay and the hospital albumin assay when clinical urine samples were tested highlight the importance of incorporating analytical validation as a checkpoint in the development of microfluidic monitoring systems. 
 
Overall, this work presents a novel method of multiplexing immunoassays in microfluidic systems that can be applied to measure protein biomarkers for TBI or another condition of interest and highlights the importance of integrating assay design with microfluidic device design to promote clinical translation.
 
Date: Friday, July 30, 2021
Time: 10:00 AM
Zoom: https://umich.zoom.us/meeting/register/tJYpdu2rrjsqH9LM0c4DZ8bs8Uj0BdggOEeE (pre-registration required)
Chair: Dr. Mark Burns

]]>
Presentation Mon, 19 Jul 2021 11:02:10 -0400 2021-07-30T10:00:00-04:00 2021-07-30T11:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
BME PhD Defense: Emine Sumeyra Turali-Emre (August 2, 2021 1:00pm) https://events.umich.edu/event/84794 84794-21624994@events.umich.edu Event Begins: Monday, August 2, 2021 1:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Biomimetic nanoparticles (NPs) are bio-inspired inorganic nanoscale materials that replicate some biological nanostructures functionalities including self-assembly, catalysis, and enzyme inhibition. These functionalities are being investigated for and, in some cases, are being utilized in optics and electronics such as chemical sensors, superhydrophobic coatings, and antireflective surfaces. This thesis examines the utilization of biomimetic inorganic NPs for various problems in biomedical engineering.

Specifically, in the first part of this thesis, I address the problem on controversial explanations of the antibacterial and other biological activity of zinc oxide NPs that are frequently utilized in cosmetics, textiles, and biomedical fields. In the second part of the thesis, I explore the self-organization of NPs into biomimetic supraparticles (SPs) for nucleic acid delivery that can be exploited as drug delivery agents.

NPs have been used in the antimicrobial field for a long time; however, their antibacterial mechanism of action against different types of bacteria remains unclear and, in many cases, misinterpreted. Most of the studies on antimicrobial NPs suggest reactive oxygen species (ROS) formation, ion release, and membrane damage as the primary source of antibacterial activity. In Chapter 2, we show that the mechanism of antibacterial activity for Staphylococcus aureus is remarkably more complex than generating ROS or the release of Zn2+ ions and is based on formation of biomimetic complexes of NPs with proteins. Gene expression analysis demonstrated that ZnO-NPs significantly affect carbohydrate metabolism and cell energetics, where the uridine monophosphate (UMP) biosynthesis pathway is highly upregulated. In Chapter 3, we explore the ZnO-NP mode of entry into S. aureus and the cell metabolism. Here, we showed that NPs enter the cells within 5 minutes of exposure and induce minimal membrane damage. We note that cells do not depolarize until 60 min post-NPs exposure. Thereby, we highlight that membrane damage is not the primary mechanism of action but rather a downstream effect of ZnO-NPs exposure to bacterial cells. Taken together, causing minimal ROS production and significant changes in carbohydrate metabolism and bioenergetics along with cell entry without immediate membrane damage imply the biomimetic function of these NPs. Further investigation into the antimicrobial mechanisms of biomimetic NPs is essential for future clinical translation.

Over the past few decades, there has been considerable interest in developing nanoscale constructs as effective delivery tools for high molecular weight drugs. In chapter 4, I explore the self-assembly of NPs into compartmentalized SPs, which mimics the structure of a virus to deliver nucleic acid into cells. The time-dependent self-assembly mechanism reveals that these SPs are formed from nanocup intermediates. We found that this intermediate stage is essential for the utilization of SP compartments. Nucleic acid is added to the system at this stage before SP formation, and high encapsulation is achieved. Similar to virus infections, once cells uptake the SP, SP disassociates in endosomes and releases the cargo.

Overall, the work presented in this thesis investigates and highlights the strong potential of biomimetic inorganic NPs use in next-generation biomedical applications.

Date: Monday, August 2, 2021
TIme: 1:00PM
Zoom: https://umich.zoom.us/j/95043183845
Chair: Prof. Nicholas Kotov

]]>
Presentation Wed, 28 Jul 2021 12:34:40 -0400 2021-08-02T13:00:00-04:00 2021-08-02T14:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
LSA Technology Services Research Support Office Hours (August 2, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270716@events.umich.edu Event Begins: Monday, August 2, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-02T14:00:00-04:00 2021-08-02T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 3, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270763@events.umich.edu Event Begins: Tuesday, August 3, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-03T10:00:00-04:00 2021-08-03T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Harnessing Big Data for Health and Social Science Research (August 3, 2021 12:00pm) https://events.umich.edu/event/84713 84713-21624468@events.umich.edu Event Begins: Tuesday, August 3, 2021 12:00pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

This lecture will be pre-recorded and available two weeks before this session on the ICPSR Summer Program YouTube channel: https://www.youtube.com/channel/UCgQWgr9Np3SKx54T_0hbo-Q

Please join us for this live Q&A session with the presenter on 8/3/21 at 12pm EDT at https://myumi.ch/ICPSR2021Blalock.

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 13:03:54 -0400 2021-08-03T12:00:00-04:00 2021-08-03T13:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Summer Program Blalock Lecture Series 2021
BME PhD Defense: Daniel Clough (August 4, 2021 10:00am) https://events.umich.edu/event/84844 84844-21625176@events.umich.edu Event Begins: Wednesday, August 4, 2021 10:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Type 1 diabetes is caused by the autoimmune destruction of insulin-producing β-cells, resulting in a chronic metabolic disorder typically treated with exogenous insulin. Even with the aid of advanced insulin pumps and real time feedback systems, blood glucose levels still deviate outside of the range maintained by native islets, which places the individual at risk for vascular complications and life-threatening hypoglycemic events. Cell replacement therapies have demonstrated the capacity to tightly control blood glucose levels. The wide adoption of cell replacement therapy is hindered by limited availability of donor islets, and the lack of effective methods to support the long-term function of these cells within a clinically accessible site. The results presented in this thesis address these limitations: through studying maturation of human pluripotent progenitor cell (hPPC) derived β cells within a transplantable biomaterial platform, and evaluating novel approaches to the implantation and support of these cells during their continued maturation in vivo.

First, I present a study that examined delivery of hPPC-derived pancreatic progenitors within microporous PLG scaffolds into the epididymal fat pad, the murine surrogate for the clinically relevant omental pouch. Kidney capsule injection, the site most commonly utilized to test stem cell-derived β cell function in murine models, was the comparison condition. We observed that the microporous scaffolds supported cell engraftment, however the levels of circulating C-peptide were lower when compared to the kidney capsule condition. The scaffolds were subsequently modified to provide sustained release of exendin-4, which led to significantly increased C-peptide production. Image analysis revealed that exendin-4 releasing scaffolds enhanced the proportion of pancreatic progenitors that matured to monohormonal insulin producing cells.

Next I present my findings from studying how hPPC-derived β cells mature and function within three transplantation sites: the i) scaffold delivery into the epididymal fat pad, ii) scaffold delivery into the subcutaneous space, and iii) the kidney capsule injection (control). Additionally, we investigated the impact of blood glucose levels on maturation of the hPPC-derived β cells by transplanting mice with pre- or post-engraftment diabetes induction. Hyperglycemia was ameliorated in the cohorts of mice that received scaffolds into the epididymal fat pad, following a period of in vivo maturation. The function of these cells was demonstrated by the reduction in blood glucose levels, healthy increase in weight, therapeutic levels of circulating human insulin, and healthy responses to glucose challenge tests. The function from the epididymal fat pad was superior to the subcutaneous space and was observed to be comparable to the kidney capsule. No differences were observed in graft function between the cohorts whose grafts matured in a diabetic or non-diabetic environment, yet several differences in gene expression were observed.

Many of the current differentiation protocols culture the cells above a feeder layer in monolayer, or in suspension within a bioreactor. Typically, these protocols require the disruption of the cell niche during key differentiation stages or pre-transplantation handling. Biomaterial scaffolds maintain the integrity of cell-to-cell and cell-to-matrix connections by providing both a space for cell niche development as well as a vehicle for transplantation into the body. Herein, I present results from testing the developmental stage in which progenitors are seeded into the 3D niche, and two differentiation strategies prior to seeding: monolayer and suspension culture. Maturation was characterized via gene expression analysis, glucose stimulated insulin secretion assay, and nondestructive microscopy utilizing a sfGFP-C-peptide cell line that reports C-peptide production and secretion. We observed that seeding clusters during the key transition phase from pancreatic progenitor to pancreatic endocrine enhanced commitment to the final beta cell fate.

This work enhances our understanding of hPPC-derived beta cell manufacturing within scaffolds, and delivery to an extrahepatic site to achieve normoglycemic blood glucose levels.

Date: Wednesday, August 4, 2021
Time: 10:00 AM
Zoom: https://umich.zoom.us/j/98009467275
Password: betacell
Chair: Dr. Lonnie Shea

]]>
Presentation Mon, 02 Aug 2021 10:58:53 -0400 2021-08-04T10:00:00-04:00 2021-08-04T11:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
EEB thesis defense: Spatial chemical ecology of tropical trees within key functional groups (August 4, 2021 2:00pm) https://events.umich.edu/event/84406 84406-21623876@events.umich.edu Event Begins: Wednesday, August 4, 2021 2:00pm
Location: Off Campus Location
Organized By: Ecology and Evolutionary Biology

Sarah presents her thesis defense.

Closer to the event, please check your email for the passcode or email eeb.gradcoord@umich.edu at least two hours prior to the start.

Image: Mystery Land, landscape in Martinique by Phalafail, Wikimedia Commons.

]]>
Livestream / Virtual Fri, 23 Jul 2021 17:26:53 -0400 2021-08-04T14:00:00-04:00 2021-08-04T15:00:00-04:00 Off Campus Location Ecology and Evolutionary Biology Livestream / Virtual Tropical trees in front of tree covered mountains and a cloudy sky. From Wikimedia Commons, Mystery Land
The Youth Policy Lab: Partnership Driven Research to Improve the Lives of Young Michiganders (August 4, 2021 7:30pm) https://events.umich.edu/event/84714 84714-21624469@events.umich.edu Event Begins: Wednesday, August 4, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 12:37:47 -0400 2021-08-04T19:30:00-04:00 2021-08-04T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Summer Program Blalock Lecture Series 2021
BME PhD Defense: Dorsa Haji Ghaffari (August 5, 2021 11:00am) https://events.umich.edu/event/84795 84795-21624995@events.umich.edu Event Begins: Thursday, August 5, 2021 11:00am
Location: Off Campus Location
Organized By: Biomedical Engineering

Retinal prostheses have restored a sense of vision in patients blinded by photoreceptor degeneration. These electronic implants operate by electrically stimulating the remaining retinal cells. While retinal prosthesis users report improvements in light perception and performing basic visual tasks, their ability to perceive shapes and letters remains limited. Investigating stimulation strategies to reduce perceptual thresholds and create focal, non-overlapping phosphenes will increase the resolution of retinal prostheses and improve the overall patient outcomes. In this thesis I explore two main strategies for electrode-specific optimization of stimulation parameters: 1) a novel pulse paradigm for threshold reduction, and 2) an automated closed-loop method for adjusting stimulation parameters to create a focal retinal activation area.

I combined human subject testing and computational modeling to investigate the effect of waveform asymmetry on perception shapes and thresholds with epiretinal stimulation. Threshold measurement and phosphene shape analysis was performed on four Argus II users. A computational model of a retinal ganglion cell (RGC) was created in the NEURON simulation environment to allow for a more thorough parameter testing and to gain insight into the biophysical mechanisms. Our human subject results suggest that asymmetric waveforms could increase perception probabilities compared to a standard symmetric pulse, and this effect can be intensified by addition of an interphase gap (IPG). Our in silico model predicts that the most effective pulse for threshold reduction is asymmetric anodic-first stimulation with small duration ratios (≤ 5) and long IPGs (≥ 2 ms). Phosphene shape analysis revealed no significant difference in percept elongation with different pulse types. Average phosphene area was larger with asymmetric anodic-first stimulation compared to other pulse types.

Prosthetic vision quality is highly dependent on the capability to precisely activate target neurons and avoid off-target activation. However, studies show elongated and inconsistent responses to single electrode stimulation, indicating unintended stimulation of off-target neurons and electrode-specific activation patterns. While tuning stimulation parameters can transform the spatial RGC activity, a manual search for optimal parameters can be time consuming and tiring for patients. I developed a process for automatic optimization of stimulation parameters in silico, which involved training neural networks for quantifying the relationship between pulse parameters and spatial response descriptors, and a closed-loop algorithm to search for optimal parameters. Using this process, I was able to guide the parameter search effectively and converge to an optimal response within a few iterations.

Finally, I presented a process for automatic optimization of stimulation parameters in vitro using calcium imaging in mouse retina. This process involved training neural networks at each iteration based on a few images, using an interior point algorithm to find the optimal parameters, and classifying the resulting calcium images with a CNN trained on previous data. Our results indicate that we can converge to optimal stimulation parameters that create focal RGC activity by sampling less than 1/3 of the parameter space. This approach can shorten the exploration time significantly compared to a manual search, especially when the parameter space is large. Findings of this project could lead to the development of a clinically applicable system for electrode-specific optimization of stimulation protocol, improving the overall outcome of artificial vision.

Date: Thursday, August 5, 2021
Time: 11:00 AM
Zoom: https://umich.zoom.us/j/93552322970
Chair: Dr. James Weiland

]]>
Presentation Wed, 28 Jul 2021 12:42:01 -0400 2021-08-05T11:00:00-04:00 2021-08-05T12:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
LSA Technology Services Research Support Office Hours (August 5, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270810@events.umich.edu Event Begins: Thursday, August 5, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-05T15:00:00-04:00 2021-08-05T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Data Collection Methods in the Age of Data Science: Where Are We Headed? (August 5, 2021 7:30pm) https://events.umich.edu/event/84715 84715-21624470@events.umich.edu Event Begins: Thursday, August 5, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 12:39:39 -0400 2021-08-05T19:30:00-04:00 2021-08-05T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Summer Program Blalock Lecture Series 2021
LSA Technology Services Research Support Office Hours (August 9, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270717@events.umich.edu Event Begins: Monday, August 9, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-09T14:00:00-04:00 2021-08-09T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 10, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270764@events.umich.edu Event Begins: Tuesday, August 10, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-10T10:00:00-04:00 2021-08-10T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
BME Master's Defense: Hind AlYahya (August 10, 2021 1:00pm) https://events.umich.edu/event/84890 84890-21625248@events.umich.edu Event Begins: Tuesday, August 10, 2021 1:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Peripheral arterial disease (PAD) is a disorder that restricts the blood flow in arteries that carry blood to the limbs; it frequently affects the legs. This restriction occurs due to severe atherosclerosis (stenosis), an accumulation of fatty materials in the vessel lumen. Stents are used to manage this disease. However, in-stent restenosis can occur at an unpredictable time, leading to emergency hospitalization or death.

The wireless magnetoelastic monitoring system showed its potential to detect restenosis. The main components of this system are a miniaturized wireless sensor integrated into the stent and a bias magnet. The purpose of using a magnet is to provide a uniform magnetic field for the sensor to operate. This work aims to improve the design of the system components to be compatible with the commercial self-expanding vascular stents. The magnetoelastic sensor was designed to fit with a conventional self-expanding stent (e.g., Innova™ from Boston Scientific Corp.) used to treat superficial femoral artery lesions. It is designed to be a single layer of MetglasTM 2826MB (12 mm x 0.85 mm x 29 um). However, the sensor could be damaged during the stent deployment. As a result, it is necessary to encapsulate the sensor. A polymeric package was designed to house the sensor and the biasing magnet. The package is attached to the stent structure by two helical wires made of nitinol material. The biasing magnet is a strip of ArnokromeTM 5 (13.2 mm x 0.85 mm x 50 um). FEA tool was used to evaluate the performance of the sensor and the magnetic strip. The results showed that the sensor vibrates at 149 kHz. The magnetic field distribution confirmed that the ArnokromeTM 5 generates a sufficient magnetic field strength for the sensor to operate. This work also covers an analytical analysis of using electromagnetic coils to provide DC bias for the system. However, the results showed that the heat dissipated from the coils could be hard to manage.

If implanting this package is successful *in vivo* experiments, the detection of restenosis will be achieved in an earlier stage, saving the patient from undergoing another surgery. Therefore, the wireless monitoring system can reduce emergency surgeries and mortality that results from PAD, leading to healthier patients and a lower burden on hospital resources.

Date: Tuesday, August 10, 2021
Time: 1:00 PM
Zoom: https://umich.zoom.us/j/99281419966
Chair: Prof. Yogesh B. Gianchandani

]]>
Presentation Tue, 03 Aug 2021 10:09:05 -0400 2021-08-10T13:00:00-04:00 2021-08-10T14:00:00-04:00 Off Campus Location Biomedical Engineering Presentation BME Event
UMBS Summer Lecture Series: Bennett Lecture in Plant & Fungal Ecology (August 10, 2021 7:00pm) https://events.umich.edu/event/84358 84358-21623500@events.umich.edu Event Begins: Tuesday, August 10, 2021 7:00pm
Location: Off Campus Location
Organized By: University of Michigan Biological Station

Dr. Knute Nadelhoffer (University of Michigan Department of Ecology and Evolutionary Biology Professor Emeritus) will present this year's Bennett Endowed Lecture in Plant & Fungal Ecology: Biological Controls on Forest Soil Organic Matter Accumulation:
Lessons from the DIRT Collaboration.

Globally, soils store more than twice as much carbon in organic forms as exists in the atmosphere as carbon dioxide (CO2). Because plant-soil systems, such as northern forests, exchange carbon with the atmosphere, small percentage changes in carbon contents of extensive ecosystems such as temperate forests can lead to significant changes in atmospheric CO2¬¬, a powerful heat-trapping gas that affects global temperatures. In addition to serving as a global carbon reservoir, soil organic matter (SOM) is a critical ecosystem component that affects soil physical, chemical, and biological properties. SOM serves to increase soil water retention, to store, recycle, and release nutrients for forest tree growth, and to protect stream and groundwater quality. Importantly, SOM enhances environmental conditions leading to high levels of biodiversity consisting of complex microbial and faunal communities that serve to maintain ecosystem and human health.

This talk will present results from a network of long-term experiments, referred to as “DIRT” (Detrital Input and Removal Treatments, including a 15-year experiment at the UM Biological Station), which is focused on understanding how forest leaf and root litter function to control SOM accumulations in forest soils.

]]>
Livestream / Virtual Fri, 06 Aug 2021 10:44:40 -0400 2021-08-10T19:00:00-04:00 2021-08-10T20:00:00-04:00 Off Campus Location University of Michigan Biological Station Livestream / Virtual Dr. Knute Nadelhoffer
Measuring Exposure to News and Political Information in the Digital Age (August 10, 2021 7:30pm) https://events.umich.edu/event/84716 84716-21624471@events.umich.edu Event Begins: Tuesday, August 10, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 12:44:49 -0400 2021-08-10T19:30:00-04:00 2021-08-10T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation ICPSR Summer Program Blalock Lecture Series 2021
Genetic background influences on gut microbiota (August 11, 2021 12:00pm) https://events.umich.edu/event/85066 85066-21625536@events.umich.edu Event Begins: Wednesday, August 11, 2021 12:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Host: Heather Gregg

]]>
Workshop / Seminar Tue, 10 Aug 2021 10:57:44 -0400 2021-08-11T12:00:00-04:00 2021-08-11T13:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Kat Milligan-Myhre
The Post-API Age Reconsidered: Social Media Research in the '20s and Beyond (August 11, 2021 12:30pm) https://events.umich.edu/event/84717 84717-21624472@events.umich.edu Event Begins: Wednesday, August 11, 2021 12:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

This lecture will be pre-recorded and available two weeks before this session on the ICPSR Summer Program YouTube channel: https://www.youtube.com/channel/UCgQWgr9Np3SKx54T_0hbo-Q

Please join us for this live Q&A session with the presenter on 8/11/21 at 12pm EDT at https://myumi.ch/ICPSR2021Blalock.

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 13:30:58 -0400 2021-08-11T12:30:00-04:00 2021-08-11T13:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation 2021 ICPSR Summer Program Blalock Lecture series
LSA Technology Services Research Support Office Hours (August 12, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270811@events.umich.edu Event Begins: Thursday, August 12, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-12T15:00:00-04:00 2021-08-12T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Measuring White Racial Solidarity and Examining its Relationship to Political Attitudes and Preferences (August 12, 2021 7:30pm) https://events.umich.edu/event/84718 84718-21624473@events.umich.edu Event Begins: Thursday, August 12, 2021 7:30pm
Location: Off Campus Location
Organized By: Inter-university Consortium for Political and Social Research

Join us for this Blalock lecture at 7:30pm EDT: https://myumi.ch/ICPSR2021Blalock

The 2021 ICPSR Summer Program Blalock Lectures are virtual, free and open to the public.

]]>
Presentation Thu, 22 Jul 2021 13:29:27 -0400 2021-08-12T19:30:00-04:00 2021-08-12T21:00:00-04:00 Off Campus Location Inter-university Consortium for Political and Social Research Presentation 2021 ICPSR Summer Program Blalock Lecture series
LSA Technology Services Research Support Office Hours (August 16, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270718@events.umich.edu Event Begins: Monday, August 16, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-16T14:00:00-04:00 2021-08-16T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 17, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270765@events.umich.edu Event Begins: Tuesday, August 17, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-17T10:00:00-04:00 2021-08-17T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 19, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270812@events.umich.edu Event Begins: Thursday, August 19, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-19T15:00:00-04:00 2021-08-19T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 23, 2021 2:00pm) https://events.umich.edu/event/77718 77718-20270719@events.umich.edu Event Begins: Monday, August 23, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-23T14:00:00-04:00 2021-08-23T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 24, 2021 10:00am) https://events.umich.edu/event/77718 77718-20270766@events.umich.edu Event Begins: Tuesday, August 24, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-24T10:00:00-04:00 2021-08-24T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
MCDB Defense: The Role of Mechanosensitive Calcium Signaling in Remodeling of Epithelial Cell-Cell Junctions (August 24, 2021 1:00pm) https://events.umich.edu/event/85322 85322-21626225@events.umich.edu Event Begins: Tuesday, August 24, 2021 1:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Mentor: Ann Miller

]]>
Workshop / Seminar Tue, 17 Aug 2021 10:53:40 -0400 2021-08-24T13:00:00-04:00 2021-08-24T14:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Yellow MCDB initials and cartoon of microscope on blue
LSA Technology Services Research Support Office Hours (August 26, 2021 3:00pm) https://events.umich.edu/event/77718 77718-20270813@events.umich.edu Event Begins: Thursday, August 26, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-26T15:00:00-04:00 2021-08-26T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 30, 2021 2:00pm) https://events.umich.edu/event/77718 77718-21637441@events.umich.edu Event Begins: Monday, August 30, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-30T14:00:00-04:00 2021-08-30T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (August 31, 2021 10:00am) https://events.umich.edu/event/77718 77718-21637424@events.umich.edu Event Begins: Tuesday, August 31, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-08-31T10:00:00-04:00 2021-08-31T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
CM-AMO Seminar | A Series of Three Lectures on: Floquet states, Rabi oscillations, Fermi's golden rule and all that (Lecture 1 of 3) (August 31, 2021 4:00pm) https://events.umich.edu/event/85767 85767-21628808@events.umich.edu Event Begins: Tuesday, August 31, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

Rabi oscillations arise when a few-level quantum system is subjected to a periodically time-varying field while Floquet states are stationary solutions of a quantum system in the presence of a periodic time-dependent perturbation. Past the simplest derivations, students interested in these topics may miss to grasp the connection between Rabi oscillations and Floquet states beyond the obvious fact that they both involve a time-varying field. Equally important, they may struggle to find pedagogical accounts in the literature discussing the effect of dissipation, which is central to the interpretation of many physical phenomena. They may also ponder about the question as to how Rabi oscillations and Floquet states relate to results of time-dependent perturbation theory, particularly concerning Fermi golden rule and linear response theory. In these series of lectures, aimed at students, we introduce an exactly solvable model of a two-level system coupled to a continuum, which interacts with a sinusoidally time-varying classical field. Results show that the behavior of the two-level system can be mapped onto the problem of a static field, if one shifts the energy separation between the two levels by an amount equal to the frequency of the field. This correspondence allows one to view Rabi oscillations and Floquet states from the different perspective of their time-independent-problem equivalents. The comparison between the rigorous results and those from perturbation theory helps clarify some of the difficulties underlying textbook proofs of Fermi golden rule, and the discussions on quantum decay and linear response theory.

]]>
Workshop / Seminar Tue, 31 Aug 2021 18:16:00 -0400 2021-08-31T16:00:00-04:00 2021-08-31T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
MCDB Defense: Dual Roles for Nuclear RNAi in **C. elegans **Dosage Compensation (September 2, 2021 2:00pm) https://events.umich.edu/event/85924 85924-21630485@events.umich.edu Event Begins: Thursday, September 2, 2021 2:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Mentor: Gyorgyi Csankovszki

]]>
Workshop / Seminar Mon, 30 Aug 2021 10:20:17 -0400 2021-09-02T14:00:00-04:00 2021-09-02T15:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Yellow MCDB initials and cartoon microscope on blue
LSA Technology Services Research Support Office Hours (September 2, 2021 3:00pm) https://events.umich.edu/event/77718 77718-21637408@events.umich.edu Event Begins: Thursday, September 2, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-02T15:00:00-04:00 2021-09-02T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
Interdisciplinary QC/CM Seminar | Dynamics and Thermodynamics of Single Molecule Junctions: A Green's Function Perspective (September 2, 2021 4:00pm) https://events.umich.edu/event/85036 85036-21625494@events.umich.edu Event Begins: Thursday, September 2, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

Nonlinear optical spectroscopy has been developed and widely utilized as control and characterization tool in studies of optical response of molecules. Similarly, nonadiabatic molecular dynamics is a fundamental problem related to breakdown of timescale separation between electron and nuclear dynamics. It plays an important role in many processes from chemistry and photochemistry to spectroscopy and non-radiative electronic relaxation and from electron and proton transfer to coherent control and photo induced energy transfer. Theoretical studies of energy storage and conversion usually rely on macroscopic thermodynamic formulation.

The progress of experimental techniques at the nanoscale made measurements of responses of single molecule junctions a reality. Proper description of such open nonequilibrium systems is a challenging theoretical problem. For example, optical spectroscopy of open nonequilibrium systems is a natural meeting point for at least two research areas: nonlinear optical spectroscopy and quantum transport; while proper description of performance of nanoscale devices for energy conversion requires development of nonequilibrium quantum thermodynamics. I’ll review our attempts in theoretical formulation of optical spectroscopy, non adiabatic molecular dynamics and quantum thermodynamics using nonequilibrium Green’s function techniques.

References
[1] N. Seshadri and M. Galperin, Phys. Rev. B 103, 085415 (2021).
[2] N. Bergmann and M. Galperin, Eur. Phys. J. Spec. Top. 230, 859-866 (2021).
[3] G. Cohen and M. Galperin, J. Chem. Phys. 152, 090901 (2020).
[4] F. Chen, K. Miwa, and M. Galperin, J. Phys. Chem. A 123, 693-701 (2019).
[5] S. Mukamel and M. Galperin, J. Phys. Chem. C 123, 29015-29023 (2019).
[6] F. Chen, M. A. Ochoa, and M. Galperin, J. Chem. Phys. 146, 092301 (2017).
[7] K. Miwa, F. Chen, and M. Galperin, Sci. Rep. 7, 9735 (2017)
[8] M. Galperin, Chem. Soc. Rev. 46, 4000-4019 (2017).
[9] K. Miwa, A. M. Najarian, R. L. McCreery, and M. Galperin, J. Phys. Chem. Lett. 10, 1550-1557 (2019).
[10] K. Miwa, H. Imada, M. Imai-Imada, K. Kimura, M. Galperin, and Y. Kim, Nano Lett. 19, 2803-2811 (2019).

]]>
Workshop / Seminar Thu, 02 Sep 2021 18:15:47 -0400 2021-09-02T16:00:00-04:00 2021-09-02T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
LAGS Seminar | Never a Dull Moment With a Career in Physics (September 3, 2021 12:00pm) https://events.umich.edu/event/85949 85949-21630599@events.umich.edu Event Begins: Friday, September 3, 2021 12:00pm
Location: West Hall
Organized By: Department of Physics

When I graduated in 1988 from the University of Michigan with a bachelor in physics, I would never have imagined where this degree would take me. I went to Harvard for a PhD in physics and then moved to Europe. I lived in both Austria and Germany, learned German, and did basic research at two universities up to the assistant professor level. Then I transitioned to industry where I gained extensive experience in technical product development, in management as the Managing Director (Geschäftsführerin) of two high tech companies as well as in sales as a Key Account Manager. Today, I design surgical microscopes for ophthalmology. My career is also strongly influenced by the work I do as the president of a non-profit association dedicated to founding an Albert Einstein museum in Ulm, Germany – his birthplace (see https://einstein.center).

Throughout my career, my motto has been: LEARNING BY DOING and it has served me well since I left Ann Arbor. In this seminar, I will share some insights for transitioning from academia to industry and why I found a career in industry and in a non-profit so multifaceted. I will also share my passion for the Einstein museum with anyone attending the seminar.

]]>
Workshop / Seminar Fri, 03 Sep 2021 18:16:03 -0400 2021-09-03T12:00:00-04:00 2021-09-03T13:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
LSA Technology Services Research Support Office Hours (September 6, 2021 2:00pm) https://events.umich.edu/event/77718 77718-21637442@events.umich.edu Event Begins: Monday, September 6, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-06T14:00:00-04:00 2021-09-06T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
LSA Technology Services Research Support Office Hours (September 7, 2021 10:00am) https://events.umich.edu/event/77718 77718-21637425@events.umich.edu Event Begins: Tuesday, September 7, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-07T10:00:00-04:00 2021-09-07T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
CM-AMO Seminar | A Series of Three Lectures on: Floquet states, Rabi oscillations, Fermi's golden rule and all that (Lecture 2 of 3) (September 7, 2021 4:00pm) https://events.umich.edu/event/85768 85768-21628809@events.umich.edu Event Begins: Tuesday, September 7, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

Rabi oscillations arise when a few-level quantum system is subjected to a periodically time-varying field while Floquet states are stationary solutions of a quantum system in the presence of a periodic time-dependent perturbation. Past the simplest derivations, students interested in these topics may miss to grasp the connection between Rabi oscillations and Floquet states beyond the obvious fact that they both involve a time-varying field. Equally important, they may struggle to find pedagogical accounts in the literature discussing the effect of dissipation, which is central to the interpretation of many physical phenomena. They may also ponder about the question as to how Rabi oscillations and Floquet states relate to results of time-dependent perturbation theory, particularly concerning Fermi golden rule and linear response theory. In these series of lectures, aimed at students, we introduce an exactly solvable model of a two-level system coupled to a continuum, which interacts with a sinusoidally time-varying classical field. Results show that the behavior of the two-level system can be mapped onto the problem of a static field, if one shifts the energy separation between the two levels by an amount equal to the frequency of the field. This correspondence allows one to view Rabi oscillations and Floquet states from the different perspective of their time-independent-problem equivalents. The comparison between the rigorous results and those from perturbation theory helps clarify some of the difficulties underlying textbook proofs of Fermi golden rule, and the discussions on quantum decay and linear response theory.

]]>
Workshop / Seminar Tue, 07 Sep 2021 18:15:53 -0400 2021-09-07T16:00:00-04:00 2021-09-07T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
Spatiotemporal organization and protein dynamics involved in regulated exocytosis of MMP-9 in breast cancer cells (September 7, 2021 4:00pm) https://events.umich.edu/event/83805 83805-21534270@events.umich.edu Event Begins: Tuesday, September 7, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Altered regulation of exocytosis is an important mechanism controlling many diseases, including cancer. Defects in exocytosis have been implicated in many cancer cell types and are generally attributed to mutations in cellular transport, trafficking, and assembly of machinery necessary for exocytosis of secretory vesicle cargo. In these cancers, up-regulation of trafficking and secretion of matrix metalloproteinase-9 (MMP-9), a proteolytic enzyme, is responsible for degrading the extracellular matrix, a necessary step in tumor progression. Using TIRF microscopy, we identified proteins associated with secretory vesicles containing MMP-9 and imaged the local dynamics of these proteins at fusion sites during regulated exocytosis of MMP-9 from MCF-7 breast cancer cells. We found that many regulators of exocytosis, including several Rab GTPases, Rab effector proteins, and SNARE/SNARE modulator proteins, are stably assembled on docked secretory vesicles before exocytosis. At the moment of fusion, many of these components are quickly lost from the vesicle, while several endocytic proteins and lipids are simultaneously recruited to exocytic sites at precisely that moment. Our findings provide insight into the dynamic behavior of key core exocytic proteins, accessory proteins, lipids, and some endocytic proteins at single sites of secretory vesicle fusion in breast cancer cells.
Dinari Harris (Howard University)

]]>
Other Tue, 07 Sep 2021 18:15:19 -0400 2021-09-07T16:00:00-04:00 2021-09-07T17:15:00-04:00 Off Campus Location Department of Chemistry Other
Department Colloquium | Megaconstellations of Satellites Are About to Ruin the Night Sky for Everyone (September 8, 2021 4:00pm) https://events.umich.edu/event/85798 85798-21629093@events.umich.edu Event Begins: Wednesday, September 8, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Physics

Department Colloquium Zoom link: https://umich.zoom.us/j/94692610056

Several companies are planning to launch megaconstellations of thousands of communication satellites (satcons), which would increase the number of active satellites in Low Earth Orbit at least twenty-fold in the next few years. SpaceX's Starlink satcon is currently largest (almost 2,000 satellites) and is adding 60 new satellites every couple of weeks. While these satcons do allow internet access in many underserved rural and remote locations, the costs are prohibitively high for all but the most well-off customers. These thousands of satellites each reflect sunlight, causing serious problems for research astronomy, and making anthropogenic light pollution a fully global phenomenon that cannot be escaped anywhere on Earth. Because of geometry and the chosen satellite orbits, latitudes near 50 degrees N and S will see the worst light pollution from these satcons. These satellites also contribute to atmospheric pollution, both on launch and re-entry, contribute to diffuse sky emission, and drastically increase the very real threat of Kessler Syndrome. I will talk about how these satellites will affect stargazers and astronomers worldwide, and what you can do to help mitigation efforts.

]]>
Workshop / Seminar Wed, 08 Sep 2021 18:15:50 -0400 2021-09-08T16:00:00-04:00 2021-09-08T17:00:00-04:00 Off Campus Location Department of Physics Workshop / Seminar
Department of Computational Medicine & Bioinformatics || Weekly Seminar Series (September 8, 2021 4:00pm) https://events.umich.edu/event/86237 86237-21632210@events.umich.edu Event Begins: Wednesday, September 8, 2021 4:00pm
Location: Off Campus Location
Organized By: DCMB Seminar Series

Abstract:

Structural variants (SVs) are a source of pathogenic variants in a clinical referral population, however, they are often under-reported due to technical limitations of detection and difficulty with clinical interpretation. For example, mobile element insertions (MEIs) are estimated to lead to a positive finding in 1 out of 1000 rare genetic disease cases, yet the numbers are far lower in clinical diagnostic laboratories. Targeted NGS with short insert size libraries, unlike genome sequencing, will have very few discordant read pairs to indicate the presence of an SV. We, therefore, developed an SV detection tool called SCRAMble (Soft Clipped Read Alignment Mapper) to identify SV breakpoints in targeted NGS.

We applied SCRAMble to a prospective clinical referral cohort for exome sequencing to identify deletions and MEIs. We also applied SCRAMble to a hereditary cancer panel assay for the identification of a large inversion involving the MSH2 gene that causes Lynch syndrome. Adding breakpoint detection to clinical targeted sequencing identifies positive findings which were missed by prior testing and by other variant callers. Detecting breakpoints allows for more precise interpretation and for more targeted confirmation assays. By applying SV breakpoint detection, we are able to diagnose ~0.3% more cases. While this is a modest gain in diagnostic yield, for the patients and families involved, a positive diagnosis, even after prior testing, can have a meaningful impact on their lives.

Zoom link: https://umich-health.zoom.us/j/93929606089?pwd=SHh6R1FOQm8xMThRemdxTEFMWWpVdz09

]]>
Livestream / Virtual Thu, 02 Sep 2021 14:28:18 -0400 2021-09-08T16:00:00-04:00 2021-09-08T17:00:00-04:00 Off Campus Location DCMB Seminar Series Livestream / Virtual Rebecca Torene, Associate Director of Genomics Research | Data Science at GeneDx
LSA Technology Services Research Support Office Hours (September 9, 2021 3:00pm) https://events.umich.edu/event/77718 77718-21637409@events.umich.edu Event Begins: Thursday, September 9, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-09T15:00:00-04:00 2021-09-09T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
BME 500 Seminar: A machine learning-based predictive model of genome-wide binding of the Aryl Hydrocarbon Receptor (September 9, 2021 4:00pm) https://events.umich.edu/event/86318 86318-21632715@events.umich.edu Event Begins: Thursday, September 9, 2021 4:00pm
Location: Off Campus Location
Organized By: Biomedical Engineering

Abstract:

The Aryl Hydrocarbon Receptor (AhR) is an inducible transcription factor (TF) whose ligands include the potent environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). TCDD-mediated toxicity is believed to occur through activation of AhR and its binding to the 5'-GCGTG-3' DNA motif, referred to as the Dioxin Response Element (DRE). However, AhR binding in intact human cells is highly dynamic and tissue-specific. Approximately 50% of all experimentally verified AhR binding sites do not contain a DRE, and a great number of otherwise accessible DREs are not bound by AhR. Identification of the determinants of tissue-specific AhR binding is crucial for understanding downstream gene regulatory effects and potential adverse health outcomes of TCDD exposure, such as liver toxicity and immune suppression. We applied XGBoost, a supervised machine learning architecture, to predict genome-wide AhR binding as a function of DNA sequences immediately flanking the DRE, and local chromatin context features such as DNase-seq, histone modifications, and TF ChIP-Seq signals, as well as DRE proximity to gene promoters. We predicted binding of induced AhR in MCF-7 breast cancer cells, human hepatocytes, and the human lymphoblastoid cell line GM17212, as well as constitutive AhR binding in HepG2 cells. Our results demonstrate highly accurate and robust models of within-tissue binding, with several specific TFs and HMs identified as predictive of AhR binding within and across tissues. Additionally, we show that tissue-specific AhR binding is driven by a complex interplay of DNA flanking sequence and local chromatin context.

]]>
Lecture / Discussion Fri, 03 Sep 2021 12:47:39 -0400 2021-09-09T16:00:00-04:00 2021-09-09T17:00:00-04:00 Off Campus Location Biomedical Engineering Lecture / Discussion BME Event
Interdisciplinary QC/CM Seminar | Incipient Intertwined Order in the Hubbard Model (September 9, 2021 4:00pm) https://events.umich.edu/event/84819 84819-21625069@events.umich.edu Event Begins: Thursday, September 9, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

The Hubbard model is the paradigmatic model of strongly correlated electron systems. Over the past several years, advanced numerical techniques have led to considerable progress in determining the ground state phases of the model, revealing spin stripe order, charge stripe order, and d-wave superconductivity as the dominant players at low energies. In this talk, I will discuss numerically exact determinantal quantum Monte Carlo calculations demonstrating how the interplay of these orders persists well above the onset of the pseudogap [1]. In particular, I will focus on the nature of fluctuating spin [2,3] and charge [4,5] stripes in the model, and show that they remain mutually commensurate at temperatures where the model exhibits bad metallic transport [6]. I will also discuss connections between these results to recent X-ray scattering experiments on cuprates [7] and possible avenues to explore intertwined orders in cold atom simulations of the Hubbard model.

References:
[1] EWH et al, arXiv:2106.09704.
[2] EWH et al, Science 358, 1161 (2017).
[3] EWH et al, npj Quantum Materials 3, 22 (2018).
[4] P. Mai, S. Karakuzu, G. Balduzzi, S. Johnston, T. A. Maier, arXiv:2106.01944.
[5] EWH, in preparation.
[6] EWH et al, Science 366, 987 (2019).
[7] S. Lee, EWH et al, in preparation.

]]>
Workshop / Seminar Thu, 09 Sep 2021 18:15:49 -0400 2021-09-09T16:00:00-04:00 2021-09-09T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
Label-free electrical detection of nucleic acids following electrokinetic enrichment for point-of-care testing (September 9, 2021 4:00pm) https://events.umich.edu/event/84379 84379-21623648@events.umich.edu Event Begins: Thursday, September 9, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Sensors that leverage the influence of a biorecognition event on charge transport, such as field-effect transistors and nanoporous membranes, are among the most sensitive because they translate localized binding into a change in a system-scale property. However, fabrication and custom functionalization of these sensors is not trivial, and their integration with protocols that pre-enrich target species and facilitate their transport to the biorecognition site is an active area of research. In this presentation, we demonstrate that ion concentration polarization (ICP) in the presence of fluid flow drives focusing and efficient capture of target nucleic acids within a packed bed of oligoprobe-conjugated beads. A key finding is that ion conduction along the surface of the bioconjugated beads is the dominant contributor to current to the electrode that drives ICP. Therefore, hybridization of a target nucleic acid (a polyanion) to the bead surface leads to a shift in the slope of the current-voltage curve. This approach is versatile in that a target nucleic acid can be detected electrically, in the absence of a label. The resulting approach allows for a plug-and-play nucleic acid sensor using off-the-shelf bioconjugated beads and simple electronics, making it advantageous for point-of-care testing.



Robbyn Anand (Iowa State University)

]]>
Other Thu, 09 Sep 2021 18:15:13 -0400 2021-09-09T16:00:00-04:00 2021-09-09T17:30:00-04:00 Off Campus Location Department of Chemistry Other
Human Genetics Annual Retreat - Keynote Seminar (September 10, 2021 2:00pm) https://events.umich.edu/event/86250 86250-21632243@events.umich.edu Event Begins: Friday, September 10, 2021 2:00pm
Location: Taubman Biomedical Science Research Building
Organized By: Department of Human Genetics

FRIDAY, SEPTEMBER 10
2:00 PM – 3:00 PM EST
BSRB KAHN AUDITORIUM
109 ZINA PITCHER PL, ANN ARBOR

HOSTED BY:
Jacob Mueller, Ph.D.
Associate Professor of Human Genetics
Associate Professor of Obstetrics and Gynecology
Associate Professor of Urology
University of Michigan

]]>
Lecture / Discussion Thu, 02 Sep 2021 16:36:15 -0400 2021-09-10T14:00:00-04:00 2021-09-10T15:00:00-04:00 Taubman Biomedical Science Research Building Department of Human Genetics Lecture / Discussion DHG RETREAT 2021_Keynote Speaker Flyer
HET Seminar | A paradigm for open quantum systems with memory from holography (September 10, 2021 3:00pm) https://events.umich.edu/event/86338 86338-21632749@events.umich.edu Event Begins: Friday, September 10, 2021 3:00pm
Location: Off Campus Location
Organized By: Leinweber Center for Theoretical Physics

The late-time, long-distance behaviour of gravitational perturbations of planar AdS black holes is controlled by hydrodynamic quasinormal modes. In the dual CFT these are modes of the conserved currents which control the infra-red dynamics. While the on-shell structure of these modes has been understood for a long-time, we have recently begun to understand how to construct an off-shell low energy effective action, an effective hydrodynamic field theory, from holography. I will describe the general lessons learnt from the gravitational analysis, sketching out a paradigm that provides a template for the analysis of general quantum systems with dissipation and long-time memory.

]]>
Lecture / Discussion Fri, 03 Sep 2021 16:25:22 -0400 2021-09-10T15:00:00-04:00 2021-09-10T16:00:00-04:00 Off Campus Location Leinweber Center for Theoretical Physics Lecture / Discussion
Kayaking with GoSTEM (September 11, 2021 1:00pm) https://events.umich.edu/event/85710 85710-21628306@events.umich.edu Event Begins: Saturday, September 11, 2021 1:00pm
Location: Off Campus Location
Organized By: Grads Out in STEM

Join Grads Out in STEM for an afternoon of kayaking at Gallup Park Livery on Sat, Sept 11, 1-3 pm. $5 registration. Open to all grad students and post docs in STEM departments and CoE at UMich. Spots are limited. Registration opens 9/1 at 8 pm. Link to register at https://sites.google.com/umich.edu/gostem/home. Sponsored by the Office of Student Affairs.

]]>
Social / Informal Gathering Thu, 26 Aug 2021 17:26:41 -0400 2021-09-11T13:00:00-04:00 2021-09-11T15:00:00-04:00 Off Campus Location Grads Out in STEM Social / Informal Gathering An orange kayak in dark water approaching dark mountains with text about the event, given in description as well.
LSA Technology Services Research Support Office Hours (September 13, 2021 2:00pm) https://events.umich.edu/event/77718 77718-21637443@events.umich.edu Event Begins: Monday, September 13, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-13T14:00:00-04:00 2021-09-13T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
RNA Innovation Seminar (September 13, 2021 4:00pm) https://events.umich.edu/event/86155 86155-21631746@events.umich.edu Event Begins: Monday, September 13, 2021 4:00pm
Location: Off Campus Location
Organized By: Center for RNA Biomedicine

"Recent improvements in modeling and design of RNA-only structures"

ABSTRACT: The discovery and design of biologically important RNA molecules is outpacing three-structural characterization. I'll describe results from my and Wah Chiu's groups that demonstrate that cryo-electron microscopy can resolve maps of several kinds of RNA-only systems. These maps enable subnanometer-resolution 3D coordinate estimation when complemented with multidimensional chemical mapping and Rosetta DRRAFTER computational modeling. If time allows, I'll describe work from the Eterna project to stabilize mRNA molecules to help accelerate worldwide COVID immunization.

]]>
Lecture / Discussion Thu, 02 Sep 2021 12:54:16 -0400 2021-09-13T16:00:00-04:00 2021-09-13T17:00:00-04:00 Off Campus Location Center for RNA Biomedicine Lecture / Discussion Rhiju Das, Stanford University
LSA Technology Services Research Support Office Hours (September 14, 2021 10:00am) https://events.umich.edu/event/77718 77718-21637426@events.umich.edu Event Begins: Tuesday, September 14, 2021 10:00am
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-14T10:00:00-04:00 2021-09-14T11:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
CM-AMO Seminar | A Series of Three Lectures on: Floquet states, Rabi oscillations, Fermi's golden rule and all that (Lecture 3 of 3) (September 14, 2021 4:00pm) https://events.umich.edu/event/85769 85769-21628810@events.umich.edu Event Begins: Tuesday, September 14, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

Rabi oscillations arise when a few-level quantum system is subjected to a periodically time-varying field while Floquet states are stationary solutions of a quantum system in the presence of a periodic time-dependent perturbation. Past the simplest derivations, students interested in these topics may miss to grasp the connection between Rabi oscillations and Floquet states beyond the obvious fact that they both involve a time-varying field. Equally important, they may struggle to find pedagogical accounts in the literature discussing the effect of dissipation, which is central to the interpretation of many physical phenomena. They may also ponder about the question as to how Rabi oscillations and Floquet states relate to results of time-dependent perturbation theory, particularly concerning Fermi golden rule and linear response theory. In these series of lectures, aimed at students, we introduce an exactly solvable model of a two-level system coupled to a continuum, which interacts with a sinusoidally time-varying classical field. Results show that the behavior of the two-level system can be mapped onto the problem of a static field, if one shifts the energy separation between the two levels by an amount equal to the frequency of the field. This correspondence allows one to view Rabi oscillations and Floquet states from the different perspective of their time-independent-problem equivalents. The comparison between the rigorous results and those from perturbation theory helps clarify some of the difficulties underlying textbook proofs of Fermi golden rule, and the discussions on quantum decay and linear response theory.

]]>
Workshop / Seminar Tue, 14 Sep 2021 18:16:04 -0400 2021-09-14T16:00:00-04:00 2021-09-14T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
McCrory Promotion Seminar (September 14, 2021 4:00pm) https://events.umich.edu/event/85745 85745-21628668@events.umich.edu Event Begins: Tuesday, September 14, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

Materials

]]>
Other Tue, 14 Sep 2021 18:15:13 -0400 2021-09-14T16:00:00-04:00 2021-09-14T17:00:00-04:00 Off Campus Location Department of Chemistry Other
Microbiome Seminar: Mechanisms of colonization resistance to Salmonella Typhimurium in the mouse (September 15, 2021 9:00am) https://events.umich.edu/event/86701 86701-21635601@events.umich.edu Event Begins: Wednesday, September 15, 2021 9:00am
Location: Off Campus Location
Organized By: Michigan Microbiome Project

Abstract: Colonization resistance is one of the primary benefits the gut microbiota provides for the host animal. How the gut bacterial community remains stable and resists invasion has been a subject of much research over many decades. We are using Salmonella Typhimurium as a model pathogen in mice, in hopes of discovering new facets to this well-studied interaction. In vitro and in vivo results point to amino acids as a potentially important nutrient for Salmonella. Key protective anaerobic bacteria also ferment amino acids, thus giving support for a nutrient competition basis for colonization resistance.

Hosts: Matt Ostrowski & Celeste Alexander
Michigan Microbiome Project
Zoom Meeting: https://umich.zoom.us/j/98500663735

https://microbe.med.umich.edu/about/seminars/mechanisms-colonization-resistance-salmonella-typhimurium-mouse

]]>
Livestream / Virtual Fri, 10 Sep 2021 11:15:26 -0400 2021-09-15T09:00:00-04:00 2021-09-15T10:00:00-04:00 Off Campus Location Michigan Microbiome Project Livestream / Virtual Michigan Microbiome Project
Conductivity and Dynamic Bonding in Nanoscale MOFs (September 15, 2021 10:00am) https://events.umich.edu/event/85711 85711-21628388@events.umich.edu Event Begins: Wednesday, September 15, 2021 10:00am
Location: Off Campus Location
Organized By: Department of Chemistry

Synthesizing metal-organic frameworks (MOFs) as nanoparticles is critical for their large-scale processability in real-world technologies and is poised to alter wide-ranging MOF behaviors, especially those related to transport phenomena. Little is known about controlled synthetic techniques, however, and studies into the impact of nanosizing have only just begun. Here, we present synthetic methods and mechanistic models that enable the precise preparation of MOF particles with conductive, magnetic, optical, and dynamic-bonding behavior distinct from their bulk counterparts. These results include the first analysis of MOFs by solution-state spectroscopy and electrochemistry, revealing size-dependent phenomena and interfacial chemistry impossible to observe with conventional framework materials. Taken together these results offer tools for fabricating MOFs at-scale, while opening fundamental questions into the structure-size-property relationships of materials, in general.

10 AM - 5 PM
1640 Chemistry
Carl Brozek (University of Oregon)

]]>
Other Wed, 15 Sep 2021 18:15:15 -0400 2021-09-15T10:00:00-04:00 2021-09-15T17:00:00-04:00 Off Campus Location Department of Chemistry Other
Intro to the Chitwan Valley Family Study (CVFS) (September 15, 2021 2:00pm) https://events.umich.edu/event/85327 85327-21626235@events.umich.edu Event Begins: Wednesday, September 15, 2021 2:00pm
Location: Off Campus Location
Organized By: Institute for Social Research

This webinar series on the Chitwan Valley Family Study (CVFS) is about global and comparative population research. Sessions include measuring mental health, Covid-19, linking data, genetics, & migrant data.

Webinar 1: Intro to CVFS
Wednesday, September 15, 2-3pm EDT
Presenters: William Axinn and Dirgha Ghimire

This webinar will explain the purpose of the CVFS and give an overview of data collection from study launch to present day. There will be a Q&A session after the presentation.

The webinar will be hosted using Zoom. Registration is required to attend the webinar. Support provided by NICHD (R25 HD101358).

Registration is required for this event: https://umich.zoom.us/meeting/register/tJwpf-qtpjojGteGYl9ntT4cBx7X9TPZtB6H

]]>
Presentation Tue, 17 Aug 2021 11:59:26 -0400 2021-09-15T14:00:00-04:00 2021-09-15T15:00:00-04:00 Off Campus Location Institute for Social Research Presentation Nepal mountains
MCDB Seminar: Dystonia transcription factor THAP1 modulates myelination by regulating ECM degradation in lysosomes (September 15, 2021 2:00pm) https://events.umich.edu/event/85498 85498-21626706@events.umich.edu Event Begins: Wednesday, September 15, 2021 2:00pm
Location: Biological Sciences Building
Organized By: Department of Molecular, Cellular, and Developmental Biology

The development and function of the nervous system is profoundly influenced by interactions of neurons with glial cells and the extracellular matrix (ECM). Mechanisms regulating the generation of myelinating glia in the CNS to facilitate myelination during development and adulthood play an essential role in circuit plasticity and motor function. Our studies identified that the transcription factor THAP1 has a critical role in regulating the maturation of the oligodendrocyte progenitor cells (OPCs) to mature myelinating oligodendrocytes (OLs). Loss-of function mutations in the THAP1 gene cause the neurodevelopmental disorder DYT6 or DYT-THAP1 dystonia, a movement disorder effecting CNS motor function. THAP1 mediates this effect by regulating the content of chondroitin sulfate (CS) GAGs, a class of long unbranched polysaccharides and coreconstituents of extracellular matrix (ECM), within the OL lineage. Our study brings attention to a new cellular pathway that controls a ECM homeostasis, and to OPCs as an important cell type in ECM regulation. Regulation of the ECM by OPCs serves an autoregulatory function in controlling OL maturation and myelination during CNS development.

Note: This is a Wednesday rather than the usual Friday time.
2:00 - 3:00pm with Q&A to follow
Hybrid
1010 BSB and Zoom
https://umich.zoom.us/j/97632305866

Passcode in Weekly Update or email mcdb-web@umich.edu for info

]]>
Workshop / Seminar Tue, 31 Aug 2021 14:41:59 -0400 2021-09-15T14:00:00-04:00 2021-09-15T15:00:00-04:00 Biological Sciences Building Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar Dan Yellajoshyula
The Future of Mobility & Connected Transportation with Smart Infrastructure (September 15, 2021 2:00pm) https://events.umich.edu/event/85754 85754-21628677@events.umich.edu Event Begins: Wednesday, September 15, 2021 2:00pm
Location: Off Campus Location
Organized By: Center for Connected and Automated Transportation

Cavnue was founded with the vision of bringing mobility to everyone. In order to do that, we must expand the autonomous driving capabilities of vehicles beyond where they are today. We believe that simplifying road designs and connecting vehicles to the infrastructure will be an important element in bringing autonomous technology to scale and making safer roads for everyone.

Billions have been invested to date, yet all we see are a few autonomous vehicle pilots running in cities across the country. How will fully driverless cars change mobility forever? What makes the technology so hard? How will connected vehicles and smart infrastructure play a part in bringing this technology to the world? This talk will create a conversation around these questions.

]]>
Livestream / Virtual Wed, 25 Aug 2021 12:53:46 -0400 2021-09-15T14:00:00-04:00 2021-09-15T15:00:00-04:00 Off Campus Location Center for Connected and Automated Transportation Livestream / Virtual Decorative Image to promote Distinguished Lecture Series with Jaime Waydo. It features Jaime's headshot as well as the presentation title
Department Colloquium | Understanding Human Development Using Pluripotent Stem Cells (September 15, 2021 4:00pm) https://events.umich.edu/event/85799 85799-21629094@events.umich.edu Event Begins: Wednesday, September 15, 2021 4:00pm
Location: West Hall
Organized By: Department of Physics

How a complete human body develops from a single fertilized egg cell is among the deepest scientific questions. A crucial stage in this process is called gastrulation, during which the basic body plan is laid out and cells differentiate to the main lineages that will form the different organs. This stage cannot be ethically studied in human embryos and is also difficult to study in other mammals. However, it can be experimentally mimicked in a dish by confining human stem cells into disc shaped colonies. These will then undergo self-organized embryo-like pattern formation while allowing systematic quantitative study. This approach has been used by a small community of mostly physicists-turned-biologists to discover new principles of human development that challenge the existing theories of pattern formation. In my talk I will give an overview of this field, discuss how I ended up there after my PhD in theoretical high energy physics, and show some recent results from my group.

]]>
Workshop / Seminar Wed, 15 Sep 2021 18:16:03 -0400 2021-09-15T16:00:00-04:00 2021-09-15T17:00:00-04:00 West Hall Department of Physics Workshop / Seminar West Hall
Department of Computational Medicine & Bioinformatics Weekly Seminar Series (September 15, 2021 4:00pm) https://events.umich.edu/event/86598 86598-21635116@events.umich.edu Event Begins: Wednesday, September 15, 2021 4:00pm
Location: Off Campus Location
Organized By: DCMB Seminar Series

Abstract:

Chromosomal instability (CIN) results in the accumulation of large-scale losses, gains, and rearrangements of DNA. The broad genomic complexity caused by CIN is a hallmark of cancer, however, there is no systematic framework to measure different types of CIN and their impact on clinical phenotypes. Here, we evaluate the extent, diversity and origin of chromosomal instability across 7,880 tumors representing 33 cancer types from the TCGA collection. We present a compendium of 17 copy number signatures characterizing specific types of CIN, with putative aetiologies supported by multiple independent data sources. The signatures predict drug response and identify new drug targets. Our framework refines the understanding of impaired homologous recombination, one of the most therapeutically targetable types of CIN. Our results illuminate a fundamental structure underlying genomic complexity and provide a resource to guide future CIN
research in human cancers.

Bio:

Florian Markowetz is a Senior Group Leader at the Cancer Research UK Cambridge Institute. He is a Royal Society Wolfson Research Merit Award holder and received a CRUK Future Leader in Cancer Research prize. He holds degrees in Mathematics (Dipl. math.) and Philosophy (M.A.) from the University of Heidelberg and a Dr. rer. nat. (PhD equivalent) in Computational Biology from Free University Berlin, for which he was awarded an Otto-Hahn Medal by the Max Planck Society. His group at the CRUK Cambridge Institute combines computational work on cancer evolution and image analysis of the tumor tissue with experimental work on understanding key cancer mechanisms like the estrogen receptor.

Zoom link: https://umich-health.zoom.us/j/93929606089?pwd=SHh6R1FOQm8xMThRemdxTEFMWWpVdz09

]]>
Livestream / Virtual Thu, 09 Sep 2021 11:24:05 -0400 2021-09-15T16:00:00-04:00 2021-09-15T17:00:00-04:00 Off Campus Location DCMB Seminar Series Livestream / Virtual Florian Markowetz (Senior Group Leader at the Cancer Research UK Cambridge Institute)
LSA Technology Services Research Support Office Hours (September 16, 2021 3:00pm) https://events.umich.edu/event/77718 77718-21637410@events.umich.edu Event Begins: Thursday, September 16, 2021 3:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-16T15:00:00-04:00 2021-09-16T16:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
EEB Thursday Seminar: Postponed (September 16, 2021 4:00pm) https://events.umich.edu/event/85681 85681-21628191@events.umich.edu Event Begins: Thursday, September 16, 2021 4:00pm
Location: Biological Sciences Building
Organized By: EEB Thursday Seminars

Our weekly seminar series featuring internal and external speakers in the field of ecology and evolutionary biology. Please check back soon for further details (time and location is still subject to change). Thank you for your patience.

]]>
Workshop / Seminar Thu, 16 Sep 2021 08:01:51 -0400 2021-09-16T16:00:00-04:00 2021-09-16T17:00:00-04:00 Biological Sciences Building EEB Thursday Seminars Workshop / Seminar Exterior of Biological Sciences Building
Prechter-Tam Bipolar Seminar Series (September 17, 2021 11:00am) https://events.umich.edu/event/85761 85761-21628703@events.umich.edu Event Begins: Friday, September 17, 2021 11:00am
Location: Off Campus Location
Organized By: Heinz C. Prechter Bipolar Research Program

Bipolar Disorder is a human condition characterized by recurrent manias and depression; an earlier term for bipolar disorder was manic depressive illness. Changes in energy levels and sleep patterns are prominent features in bipolar, very high energy with little need for sleep in manias and low energy with disrupted sleep during depressions. The cause of bipolar remains an enigma, scientists know plenty about the brain, but they simply don’t know why people develop bipolar or why they experience an episode at any given time.

The philosophy of the Prechter program embraces a pluralistic view to causality. There are many causes and contributing factors behind this condition. A precipitating or causal element of an episode today may not be as prominent in a later episode. There are many scientific disciplines behind the emerging sciences of bipolar and the challenge will be to integrate the emerging knowledge over time to help individuals and families that live with this condition.

FEATURED DISCUSSANTS

Melissa Haendel, Ph.D.
Chief Research Informatics Officer at the University of Colorado Anschutz Medical Campus

Peter Robinson, M.D., MSc.
Professor of Computational Biology, The Jackson Laboratory

PANELISTS

Ole Andreassen, Ph.D.
Professor in psychiatry at University of Oslo
Director of Norwegian Centre for Mental Disease Research

Katherine Burdick, Ph.D.
Director, Mood and Psychosis Research Program at Harvard Medical School

Mark A. Frye, M.D.
Professor of Psychiatry - Mayo Clinic

Sarah Morris, Ph.D.
Chief of the Adult Psychopathology and Psychosocial Interventions Research Branch of the National Institute of Mental Health (NIMH) Division of Translational Research (DTR)

Andrew A. Nierenberg, M.D.
Director, Dauten Family Center for Bipolar Treatment Innovation - Massachusetts General Hospital

]]>
Livestream / Virtual Thu, 26 Aug 2021 11:18:05 -0400 2021-09-17T11:00:00-04:00 2021-09-17T12:00:00-04:00 Off Campus Location Heinz C. Prechter Bipolar Research Program Livestream / Virtual Prechter-Tam Seminar Series
MCDB Seminar: Mechanisms Linking Cell Mechanics and Metabolism (September 17, 2021 12:00pm) https://events.umich.edu/event/85313 85313-21626216@events.umich.edu Event Begins: Friday, September 17, 2021 12:00pm
Location: Off Campus Location
Organized By: Department of Molecular, Cellular, and Developmental Biology

Host: Ann Miller

Note: This seminar is now virtual. Zoom link and password in Weekly Update or email us at: mcdb-web@umich.edu.

]]>
Workshop / Seminar Thu, 26 Aug 2021 17:47:45 -0400 2021-09-17T12:00:00-04:00 2021-09-17T13:00:00-04:00 Off Campus Location Department of Molecular, Cellular, and Developmental Biology Workshop / Seminar portrait of Kris DeMali (blond woman in red blouse)
Opportunity Kick-Off: Preparing a Competitive NIH S10 Instrumentation Proposal (September 17, 2021 12:00pm) https://events.umich.edu/event/85468 85468-21626488@events.umich.edu Event Begins: Friday, September 17, 2021 12:00pm
Location: Off Campus Location
Organized By: OVPR Office of Research Development

Hosted by U-M Research Development and the Biosciences Initiative, this webinar will provide an overview of NIH S10 Instrumentation Grants, including U-M success rates, common reviewer critiques, a timeline for developing a strong proposal, and resources to support your efforts.
Recent S10 awardees will join our panel to discuss their experiences, offer tips for success and answer your questions.

]]>
Workshop / Seminar Thu, 19 Aug 2021 16:59:13 -0400 2021-09-17T12:00:00-04:00 2021-09-17T13:00:00-04:00 Off Campus Location OVPR Office of Research Development Workshop / Seminar Closeup of microscope
HET Seminar | The Impact of a Midband Gravitational Wave Experiment On Detectability of Cosmological Stochastic Gravitational Wave Backgrounds (September 17, 2021 3:00pm) https://events.umich.edu/event/86118 86118-21632221@events.umich.edu Event Begins: Friday, September 17, 2021 3:00pm
Location: Off Campus Location
Organized By: Leinweber Center for Theoretical Physics

I will discuss the impact of a future midband gravitational wave experiment on improving detectability of a cosmologically sourced stochastic GW background. Specific proposed midband experiments considered are TianGo, B-DECIGO and AEDGE. We propose a combined power-law integrated sensitivity (CPLS) curve combining GW experiments over different frequency bands, which shows significant improvement in sensitivity to SGWBs with the aid of a midband experiment. We consider GW emission from cosmic strings and phase transitions as benchmark examples of cosmological SGWBs. We explicitly model various astrophysical SGWB sources, most importantly from unresolved black hole mergers. Based on analysis using Markov Chain Monte Carlo, we demonstrated that midband experiments can, when combined with LIGO A+ and LISA, can significantly improve sensitivities to cosmological SGWBs and better separate them from astrophysical SGWBs

]]>
Lecture / Discussion Wed, 01 Sep 2021 11:58:12 -0400 2021-09-17T15:00:00-04:00 2021-09-17T16:00:00-04:00 Off Campus Location Leinweber Center for Theoretical Physics Lecture / Discussion
Ginger Shultz Promotion Seminar (September 17, 2021 4:00pm) https://events.umich.edu/event/86997 86997-21638109@events.umich.edu Event Begins: Friday, September 17, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Chemistry

ChemEd

]]>
Other Fri, 17 Sep 2021 18:15:19 -0400 2021-09-17T16:00:00-04:00 2021-09-17T17:00:00-04:00 Off Campus Location Department of Chemistry Other
Droplet Like It's Hot: How Chemistry Changes in Tiny Volumes (September 20, 2021 10:00am) https://events.umich.edu/event/86736 86736-21635921@events.umich.edu Event Begins: Monday, September 20, 2021 10:00am
Location: Chemistry Dow Lab
Organized By: Department of Chemistry

Analytical
Jeffrey Dick (University of North Carolina)

]]>
Other Mon, 20 Sep 2021 18:15:25 -0400 2021-09-20T10:00:00-04:00 2021-09-20T17:00:00-04:00 Chemistry Dow Lab Department of Chemistry Other Chemistry Dow Lab
LSA Technology Services Research Support Office Hours (September 20, 2021 2:00pm) https://events.umich.edu/event/77718 77718-21637444@events.umich.edu Event Begins: Monday, September 20, 2021 2:00pm
Location: Off Campus Location
Organized By: LSA Technology Services

The Research Team within LSA Technology Services is excited to announce virtual office hours for research computing support. These are regularly scheduled times when we will have subject matter experts in geographic information systems, high performance computing, digital scholarship, and computer programming available for drop-in support. Faculty, staff, and students with research-related questions pertaining to any of these areas can stop by to ask questions, get help working through a problem, or inquire about a new project—no appointment necessary!

Not sure what we can do to help? Read on for more details about the services provided by each of these teams.

*Digital Scholarship*
Our digital scholarship team specializes in humanities, social sciences, and interdisciplinary digital project methods and can provide assistance with:
* Conceptualizing, planning, and finding resources for a digital project
* How to version, archive, and preserve a project
* Sustainability, preservation, accessibility, privacy, consent, or grant requirements
New to digital projects? We can also talk about how to demonstrate the scholarly rigor of your digital project, accurately credit the labor required of the project at every stage, and how to provide evidence and metrics for promotion and job dossiers.

*Geographic Information Systems (GIS)*

Our GIS specialists can help with your geographic data needs, including the following:
* Making maps for use in a class, grant proposal, or publication
* Geospatial analysis: identifying spatial patterns and trends in your data
* Georeferencing: assigning geographic coordinates to a historic paper map or a hand-drawn sketch for digital use as a basemap or combined display with other data
* Geocoding: convert a spreadsheet with addresses into latitude-longitude so you can plot your data on a map
* StoryMaps: harness the power of maps to tell your story
* Integrating smartphones or tablets and GIS in your field courses or researchSetting up workshops for a class or group interested in learning to use GIS in the context of your discipline
* Assistance with ESRI's ArcGIS platform, including ArcGIS Pro and ArcGIS Online, or other geospatial software
* Developing your own custom GIS web application or mobile application

*High Performance Computing (HPC)*

Our HPC team can help with:
* Accessing U-M’s new Great Lakes HPC (High Performance Computing) cluster
* Moving your computational work from your laptop or workstation to the cluster, freeing up your machines for other tasks
* Compiling, installing, or configuring a wide range of computational software
* Setting up automated workflows to save time
* Debugging your programs to see why they are crashing
* Evaluating the benefits of parallel computing, more memory or system resources for your code
We regularly support Python, R, MATLAB, C/C++, Java, Julia, Go, and many other applications.

*Research Support Programming*

Our computer programming team can help with any of the following:

* Debugging, repair, and improvements or upgrades to your existing code
* References to training and coding resources to assist in your project
* Design and development of custom software to support your research
* Incorporation of lab-specific hardware into custom software applications.
* Writing funding for any of the above into your grant proposals
We're experienced in MATLAB, Python, R, LabVIEW, JavaScript, MedPC, iOS development, and more.

Who can join the office hours?
LSA Faculty, staff, and students with research-related questions on geographic information systems, high performance computing, digital scholarship, and computer programming

When and where is it?
Our virtual office hours use Zoom:
Mondays, 2:00–3:00 P.M.
Tuesdays, 10:00–11:00 A.M.
Thursdays, 3:00–4:00 P.M.

]]>
Other Thu, 09 Dec 2021 16:01:55 -0500 2021-09-20T14:00:00-04:00 2021-09-20T15:00:00-04:00 Off Campus Location LSA Technology Services Other Research Office Hours
HEP-Astro Seminar | Quest for KL —> pi0 nu nu-bar (September 20, 2021 4:00pm) https://events.umich.edu/event/86612 86612-21635219@events.umich.edu Event Begins: Monday, September 20, 2021 4:00pm
Location: Off Campus Location
Organized By: Department of Physics

The KL —> pi0 nu nu-bar decay is one of the sensitive probes to search for new physics beyond the Standard Model. Because the branching ratio predicted by the Standard Model (3 x 10^{-11}) and its theoretical uncertainty are small, a small deviation from the prediction would signify an existence of new physics. Although the decay mode is theoretically clean, it is difficult to observe experimentally. Not only because the observable particles are limited to two photons from the pi0, backgrounds should be controlled and understood to the level of O(10^-{11}). In this talk, I will briefly review several experimental ideas in the past, explain how the current J-PARC KOTO experiment started and progressed, and show some future plans.

]]>
Workshop / Seminar Mon, 20 Sep 2021 18:16:13 -0400 2021-09-20T16:00:00-04:00 2021-09-20T17:00:00-04:00 Off Campus Location Department of Physics Workshop / Seminar