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Presented By: Department of Mathematics

Student AIM Seminar

Treecode Accelerated Methods in Biomolecular Simulations

Treecode methods provide a useful tool for accelerating computation in many-body problems. These methods involve a hierarchical decomposition of the computational domain into a tree-like structure of particle clusters, allowing for fast evaluation of long-range interactions.

In this talk, we explore the application of these tools to two related biomolecular problems. First, we will discuss the evaluation of Coulomb and screened-Coulomb potentials resulting from a collection of point charges. Second, we will explore the application of treecodes to a boundary-integral method for solving the Poisson-Boltzmann Equation, a model for the electrostatic interactions of biomolecules in an ionic solvent. Speaker(s): Leighton Wilson (University of Michigan)

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