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Presented By: LSA Biophysics

Biophysics Seminar: Professor Rama Ranganathan, UT Southwestern Medical Center

“The Evolutionary “Design” of Proteins”

Rama Ranganathan Rama Ranganathan
Rama Ranganathan
Abstract: Proteins can fold spontaneously into well-defined three-dimensional structures and can carry out complex biochemical reactions such as molecular recognition, catalysis, and allosteric communication. The precision required for these properties is somehow achieved while also preserving evolvability – the capacity for adaptive variation in response to ever-changing selection pressures. How are proteins built in Nature to support all of these properties? To address this question, we developed an approach (the statistical coupling analysis or SCA) for deducing the pattern of constraints on amino acid residues in proteins through statistical analysis of the evolutionary divergence of a protein family. This approach reveals a novel decomposition of proteins into sparse groups of co-evolving amino acids that we term “protein sectors”. The sectors comprise physically connected networks in the tertiary structure and can be modular – with different sectors in a single protein delivering different functional properties. Experiments in several protein systems demonstrate the importance of the sectors and importantly, the SCA information was shown to be necessary and sufficient to design functional artificial proteins without the use of any direct structural or chemical information. These results suggest that sectors are the conserved units of folding, function, and adaptability in natural proteins. We are now working on two key problems: (1) understanding the physical mechanisms underlying sectors, and (2) defining how the dynamics of the evolutionary process controls the emergence of this structural architecture in proteins.
Rama Ranganathan Rama Ranganathan
Rama Ranganathan

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